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BaseInfo

ncRNA ID novel_gma_miR6438
Species Glycine max
Class miRNA
Genome position Chr17:36381383-36381534 [+]
Reference genome Glycine_max_v2.0
Source SRR1295524
Length 24
Mature sequence(if miRNA) 1 - AUGAUUUUGUGGAUCAAAGGAGGU - 24
Stem-loop(if miRNA) --      U                            C      C       A      A           --A  G
  AUGAUU UGUGGAUCAAAGGAGGUCAUUCUUCAAU UUUAUC UAUGACU GGGAAU AGAGUUAUCCU   UG C
  |||||| |||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||||||||   ||
  UACUAA ACACCUAGUUUCCUCCAGUAAGAGGUUA AAAUAG AUACUGG UCCUUA UCUCAAUGGGG   GC A
UA      U                            U      A       A      A           GUG  G
Stem-loop sequence AUGAUUUUGUGGAUCAAAGGAGGUCAUUCUUCAAUCUUUAUCCUAUGACUAGGGAAUAAGAGUUAUCCUAUGGCAGCGGUGGGGGUAACUCUAAUUCCUAGGUCAUAAGAUAAAUAUUGGAGAAUGACCUCCUUUGAUCCACAUAAUCAUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001317431.1
ncRNA:24   UGGA----GGAAACUAGGUGUUUUAGUA   1
  =|=|----|*|||||||*||||||||||
targets:353   GCUUGAUGCAUUUGAUCAACAAAAUCAU   380

2.5 Glycine max nitric oxide synthase-interacting protein-like (LOC100786703), mRNA nitric oxide synthase-interacting protein-like(LOC100786703) coding protein psRNATarget
BT096777.1
ncRNA:24   UGGA----GGAAACUAGGUGUUUUAGUA   1
  =|=|----|*|||||||*||||||||||
targets:355   GCUUGAUGCAUUUGAUCAACAAAAUCAU   382

2.5 Soybean clone JCVI-FLGm-21M15 unknown mRNA NA coding protein psRNATarget
AK285533.1
ncRNA:24   UGGA----GGAAACUAGGUGUUUUAGUA   1
  =|=|----|*|||||||*||||||||||
targets:382   GCUUGAUGCAUUUGAUCAACAAAAUCAU   409

2.5 Glycine max cDNA, clone: GMFL01-11-B17 NA coding protein psRNATarget
XM_003545761.3
ncRNA:24   UGGA----GGAAACUAGGUGUUUUAGUA   1
  =|=|----|*|||||||*||||||||||
targets:408   GCUUGAUGCAUUUGAUCAACAAAAUCAU   435

2.5 PREDICTED: Glycine max nitric oxide synthase-interacting protein-like (LOC100806356), mRNA nitric oxide synthase-interacting protein-like(LOC100806356) coding protein psRNATarget
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