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BaseInfo

ncRNA ID novel_gma_miR6434
Species Glycine max
Class miRNA
Genome position Chr16:3536287-3536510 [-]
Reference genome Glycine_max_v2.0
Source SRR1295524;SRR1295525
Length 24
Mature sequence(if miRNA) 1 - AUCUCAAAAACAUUGUCCUCCUCU - 24
Stem-loop(if miRNA) --     A UG    G         U   A          A      C    U  G       C      --A     C            G                AUA  G
  AGGAG A  GUGU UUUGAGAUU CUU AUUGUCUUUC UAUCAU CACA AA UUGUUUC CUUUCU   CUCUA UAAAUAAAGUUU UAUUUCACCAUUCAUA   UU A
  ||||| |  |||| ||||||||| ||| |||||||||| |||||| |||| || ||||||| ||||||   ||||| |||||||||||| ||||||||||||||||   ||
  UCCUC U  UACA AAACUCUAA GAA UGACGGAAAG AUAGUA GUGU UU AACGAGG GAAAGA   GAGAU GUUUAUUUUAAA AUAAAGUGGUAGGUAU   AG C
UC     C GU    A         C   C          C      A    U  G       A      GAG     A            G                --G  A
Stem-loop sequence AGGAGAAUGGUGUGUUUGAGAUUUCUUAAUUGUCUUUCAUAUCAUCCACAUAAGUUGUUUCCCUUUCUACUCUACUAAAUAAAGUUUGUAUUUCACCAUUCAUAAUAUUGACAGAGUAUGGAUGGUGAAAUAGAAAUUUUAUUUGAUAGAGGAGAGAAAGAGGAGCAAGUUUUGUGAAUGAUACGAAAGGCAGUCAAGCAAUCUCAAAAACAUUGUCCUCCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519637.3
ncRNA:24   UCUCCUCCUGUUACAAAAACUCUA   1
  |||*|||||*||||||||*|||||
targets:404   AGAAGAGGAAAAUGUUUUGGAGAU   427

2.5 PREDICTED: Glycine max uncharacterized LOC100806244 (LOC100806244), mRNA uncharacterized LOC100806244(LOC100806244) coding protein psRNATarget