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BaseInfo

ncRNA ID novel_gma_miR6428
Species Glycine max
Class miRNA
Genome position Chr9:14446747-14446852 [-]
Reference genome Glycine_max_v2.0
Source SRR1295524
Length 24
Mature sequence(if miRNA) 1 - UUUCGAUUGGCUAUAAGAGUGACU - 24
Stem-loop(if miRNA) --    A   U    UG   AU    -       UUU   U   A    UC  U
  UCAU UUU UGGU  GUU  AAGA GUGACUU   AAG CAU UUUU  GG U
  |||| ||| ||||  |||  |||| |||||||   ||| ||| ||||  ||
  AGUG GAA AUCG  UAG  UUUU UACUGAA   UUC GUG AGAA  UC G
UC    A   U    GU   CU    A       UUU   U   -    UA  G
Stem-loop sequence UCAUAUUUUUGGUUGGUUAUAAGAGUGACUUUUUAAGUCAUAUUUUUCGGUUGGCUAUAAGAGUGUCUUUUUAAGUCAUAUUUUUCGAUUGGCUAUAAGAGUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589458.2
ncRNA:24   UCAGUGAGAAUAUCGGUUAGCUUU   1
  |||||||||*||||||||*|||||
targets:670   AGUCACUCUAAUAGCCAACCGAAA   693

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget
XM_006589458.2
ncRNA:24   UCAGUGAGAAUAUCGGUUAGCUUU   1
  |||||||*|||||*||||||||||
targets:708   AGUCACUAUUAUAACCAAUCGAAA   731

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget
XM_006589458.2
ncRNA:24   UCAGUGAGAAUAUCGGUUAGCUUU   1
  |||=|||*||||||||||*|||||
targets:783   AGUUACUAUUAUAGCCAACCGAAA   806

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget