Search result

BaseInfo

ncRNA ID novel_gma_miR6425
Species Glycine max
Class miRNA
Genome position Chr8:39813703-39813856 [+]
Reference genome Glycine_max_v2.0
Source SRR1295524
Length 24
Mature sequence(if miRNA) 1 - AGGGAGAAAGAAAAGUUGAAGAAA - 24
Stem-loop(if miRNA) AG      AGAAA      A   AUGUUUCUCAACUGGGACAAGGAAAAAUGAAGAAAUGAGCUCUCUCUAUAUAGGGAG
  GGAGAA     AGUUGA GAA                                                         U
  ||||||     |||||| |||
  CUUCUU     UCCUUU UUU                                                         G
--      -----      -   UUCUUUUUUUUCCGAAGUUCAGGUUGUAGCGAGUUCUAUUUAUGAACUUAUCACAAA
Stem-loop sequence AGGGAGAAAGAAAAGUUGAAGAAAUGUUUCUCAACUGGGACAAGGAAAAAUGAAGAAAUGAGCUCUCUCUAUAUAGGGAGUGAAACACUAUUCAAGUAUUUAUCUUGAGCGAUGUUGGACUUGAAGCCUUUUUUUUCUUUUUUUUCCUUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006590815.2
ncRNA:24   AAAG-AAGUUGAAAAGAAAGAGGGA   1
  *|||-|||*||||||||||||=|||
targets:63   AUUCGUUCCACUUUUCUUUCUUCCU   87

2.5 PREDICTED: Glycine max uncharacterized LOC100783658 (LOC100783658), transcript variant X1, mRNA uncharacterized LOC100783658(LOC100783658) coding protein psRNATarget
XM_006590816.2
ncRNA:24   AAAG-AAGUUGAAAAGAAAGAGGGA   1
  *|||-|||*||||||||||||=|||
targets:67   AUUCGUUCCACUUUUCUUUCUUCCU   91

2.5 PREDICTED: Glycine max uncharacterized LOC100783658 (LOC100783658), transcript variant X2, mRNA uncharacterized LOC100783658(LOC100783658) coding protein psRNATarget