Search result

BaseInfo

ncRNA ID	novel_gma_miR6405
Species	Glycine max
Class	miRNA
Genome position	Chr9:11497563-11497657 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295522
Length	23
Mature sequence(if miRNA)	1 - AGGACGAAAAACAAAACAAACUU - 23
Stem-loop(if miRNA)	--        GA     A       A   ----     -AG     GCUU   GUUUGUUU  UUUUU GUCCUUA AGC    ACUUU   UUAAC    U   ||||||||  ||||| ||||||| |||    |||||   |||||   CAAACAAA  AAAAA CAGGAAU UCG    UGAAA   AAUUG    G UU        AC     G       A   AUUU     AAA     ACAA
Stem-loop sequence	GUUUGUUUGAUUUUUAGUCCUUAAAGCACUUUAGUUAACGCUUUGAACAGUUAAAAAAAAGUUUUAGCUAUAAGGACGAAAAACAAAACAAACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014777382.1	ncRNA:23   UUCAAACAAAACAAAAAGCAGGA   1   ||-||*||||||||||||||||* targets:260   AA-UUCGUUUUGUUUUUCGUCCC   281 Target Full Sequence	2.0	PREDICTED: Glycine max 12-oxophytodienoate reductase 2-like (LOC106799210), mRNA	12-oxophytodienoate reductase 2-like(LOC106799210)	coding protein	psRNATarget
XM_006586872.2	ncRNA:23   UUCAAACAAAACAAAAAGCAGGA   1   ***|||*||||||||||||||=| targets:161   UUAUUUCUUUUGUUUUUCGUCUU   183 Target Full Sequence	2.5	PREDICTED: Glycine max sucrose nonfermenting 4-like protein (LOC100781819), transcript variant X4, mRNA	sucrose nonfermenting 4-like protein(LOC100781819)	coding protein	psRNATarget
XM_006586871.2	ncRNA:23   UUCAAACAAAACAAAAAGCAGGA   1   ***|||*||||||||||||||=| targets:161   UUAUUUCUUUUGUUUUUCGUCUU   183 Target Full Sequence	2.5	PREDICTED: Glycine max sucrose nonfermenting 4-like protein (LOC100781819), transcript variant X3, mRNA	sucrose nonfermenting 4-like protein(LOC100781819)	coding protein	psRNATarget
XM_003533418.3	ncRNA:23   UUCAAACAAAACAAAAAGCAGGA   1   ***|||*||||||||||||||=| targets:160   UUAUUUCUUUUGUUUUUCGUCUU   182 Target Full Sequence	2.5	PREDICTED: Glycine max sucrose nonfermenting 4-like protein (LOC100781819), transcript variant X6, mRNA	sucrose nonfermenting 4-like protein(LOC100781819)	coding protein	psRNATarget
XM_006586873.2	ncRNA:23   UUCAAACAAAACAAAAAGCAGGA   1   ***|||*||||||||||||||=| targets:161   UUAUUUCUUUUGUUUUUCGUCUU   183 Target Full Sequence	2.5	PREDICTED: Glycine max sucrose nonfermenting 4-like protein (LOC100781819), transcript variant X5, mRNA	sucrose nonfermenting 4-like protein(LOC100781819)	coding protein	psRNATarget