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BaseInfo

ncRNA ID novel_gma_miR6394
Species Glycine max
Class miRNA
Genome position Chr20:15594830-15594887 [+]
Reference genome Glycine_max_v2.0
Source SRR1295522
Length 22
Mature sequence(if miRNA) 1 - UUGGGUUGGAAUUGUGCUUAGC - 22
Stem-loop(if miRNA) --     UU           U    CACU
  UUGGG  GGAAUUGUGCU AGCG    A
  |||||  ||||||||||| ||||
  GACUC  CCUUAACGCGA UCGU    A
UG     UC           C    UCUU
Stem-loop sequence UUGGGUUGGAAUUGUGCUUAGCGCACUAAUUCUUGCUCAGCGCAAUUCCCUCUCAGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003517759.1
ncRNA:22   CGAUUCGUGUUAAGGUUGGGUU   1
  *=||||||*|||||||||=|||
targets:537   CUUAAGCAAAAUUCCAACUCAA   558

2.5 PREDICTED: Glycine max myb-related protein Zm38-like (LOC100785734), mRNA myb-related protein Zm38-like(LOC100785734) coding protein psRNATarget
NM_001250398.1
ncRNA:22   CGAUUCGUGUUAAGGUUGGGUU   1
  |=*|||*|||||*|||||||||
targets:370   GUGAAGAACAAUCCCAACCCAA   391

2.5 Glycine max WRKY21 (LOC732584), mRNA WRKY21(LOC732584) coding protein psRNATarget
DQ322691.1
ncRNA:22   CGAUUCGUGUUAAGGUUGGGUU   1
  |=*|||*|||||*|||||||||
targets:370   GUGAAGAACAAUCCCAACCCAA   391

2.5 Glycine max WRKY21 mRNA, complete cds NA coding protein psRNATarget