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BaseInfo

ncRNA ID novel_gma_miR6382
Species Glycine max
Class miRNA
Genome position Chr2:9026111-9026196 [+]
Reference genome Glycine_max_v2.0
Source SRR1295521
Length 22
Mature sequence(if miRNA) 65 - CAGAGACCUUUUGAGAAUUAAA - 86
Stem-loop(if miRNA) --     UC          G          UU          C
  UAAUU  CAAAAGGUCU UGUCGUUAAA  UUUUUUAACU U
  |||||  |||||||||| ||||||||||  |||||||||| A
  AUUAA  GUUUUCCAGA ACGGUAAUUU  AAGAAAUUGA U
AA     GA          G          -U          U
Stem-loop sequence UAAUUUCCAAAAGGUCUGUGUCGUUAAAUUUUUUUUAACUCUAUUAGUUAAAGAAUUUUAAUGGCAGAGACCUUUUGAGAAUUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001254594.2
ncRNA:22   AAAUUAAGAGUUUUCCAGAGAC   1
  ||*|||||||||||||||||**
targets:295   UUGAAUUCUCAAAAGGUCUCAU   316

2.5 Glycine max biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like (LOC100777962), mRNA biotin carboxyl carrier protein of acetyl-CoA carboxylase 2, chloroplastic-like(LOC100777962) coding protein psRNATarget
AK245356.1
ncRNA:22   AAAUUAAGAGUUUUCCAGAGAC   1
  ||*|||||||||||||||||**
targets:285   UUGAAUUCUCAAAAGGUCUCAU   306

2.5 Glycine max cDNA, clone: GMFL01-28-C14 NA coding protein psRNATarget