ncRNA ID | novel_gma_miR6367 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:56643524-56643638 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1295521 |
Length | 23 |
Mature sequence(if miRNA) | 93 - AAGGAAGAAAGUUGGUGGUAGGC - 115 |
Stem-loop(if miRNA) |
---AA                     ----------      C     GAAUA     CAAU  G      GGAAGAAAGUUGGUGGUAGGC          GUGUUG UGUUG     UGUGG    UG C      |||||||||||||||||||||          |||||| |||||     |||||    || A      CCUUCUUUCAACCACCGUCCG          CAUAGU ACAAC     ACACU    AC U UGUGC                     UUUAGGUCGU      -     --AAA     --CC  A |
Stem-loop sequence | AAGGAAGAAAGUUGGUGGUAGGCGUGUUGCUGUUGGAAUAUGUGGCAAUUGGCAUACACCUCACAAAACAACAUGAUACUGCUGGAUUUGCCUGCCACCAACUUUCUUCCCGUGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014772871.1 |
|
3.0 | PREDICTED: Glycine max protein indeterminate-domain 5, chloroplastic-like (LOC100780268), transcript variant X2, mRNA | protein indeterminate-domain 5, chloroplastic-like(LOC100780268) | coding protein | psRNATarget | |||||||||
XM_003555400.3 |
|
3.0 | PREDICTED: Glycine max protein indeterminate-domain 5, chloroplastic-like (LOC100780268), transcript variant X1, mRNA | protein indeterminate-domain 5, chloroplastic-like(LOC100780268) | coding protein | psRNATarget |