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BaseInfo

ncRNA ID novel_gma_miR6367
Species Glycine max
Class miRNA
Genome position Chr18:56643524-56643638 [-]
Reference genome Glycine_max_v2.0
Source SRR1295521
Length 23
Mature sequence(if miRNA) 93 - AAGGAAGAAAGUUGGUGGUAGGC - 115
Stem-loop(if miRNA) ---AA                     ----------      C     GAAUA     CAAU  G
     GGAAGAAAGUUGGUGGUAGGC          GUGUUG UGUUG     UGUGG    UG C
     |||||||||||||||||||||          |||||| |||||     |||||    || A
     CCUUCUUUCAACCACCGUCCG          CAUAGU ACAAC     ACACU    AC U
UGUGC                     UUUAGGUCGU      -     --AAA     --CC  A
Stem-loop sequence AAGGAAGAAAGUUGGUGGUAGGCGUGUUGCUGUUGGAAUAUGUGGCAAUUGGCAUACACCUCACAAAACAACAUGAUACUGCUGGAUUUGCCUGCCACCAACUUUCUUCCCGUGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772871.1
ncRNA:23   CGGAUGGUGGUUGA-AAGAAGGAA   1
  **|*||||||||||-|||||||||
targets:1558   CACAACCACCAACUGUUCUUCCUU   1581

3.0 PREDICTED: Glycine max protein indeterminate-domain 5, chloroplastic-like (LOC100780268), transcript variant X2, mRNA protein indeterminate-domain 5, chloroplastic-like(LOC100780268) coding protein psRNATarget
XM_003555400.3
ncRNA:23   CGGAUGGUGGUUGA-AAGAAGGAA   1
  **|*||||||||||-|||||||||
targets:1562   CACAACCACCAACUGUUCUUCCUU   1585

3.0 PREDICTED: Glycine max protein indeterminate-domain 5, chloroplastic-like (LOC100780268), transcript variant X1, mRNA protein indeterminate-domain 5, chloroplastic-like(LOC100780268) coding protein psRNATarget