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BaseInfo

ncRNA ID novel_gma_miR6356
Species Glycine max
Class miRNA
Genome position Chr16:21797389-21797593 [+]
Reference genome Glycine_max_v2.0
Source SRR1295521
Length 23
Mature sequence(if miRNA) 183 - UAUAGGGACUAAAAGGGAUAAGU - 205
Stem-loop(if miRNA) --                                A  G       CUU    A    C        GC       A     AC       -          CU
  UUAUCUCUUUUAGUUCCUAUAGUUAAUAAGUG AU UUUUAGU   UGAA UUUA AUUUUAAU  UCAAAAG UUCUU  CGUUAAA UUUUUUAACU  G
  |||||||||||||||||||||||||||||||| || |||||||   |||| |||| ||||||||  ||||||| |||||  ||||||| ||||||||||
  AAUAGGGAAAAUCAGGGAUAUCAAUUAUUCAU UA AAAAUCA   ACUU AAAU UAAAAUUA  AGUUUUU AGGAA  GUAAUUU AAGAAAUUGG  U
UG                                C  A       AGU    C    A        AA       C     CA       U          UA
Stem-loop sequence UUAUCUCUUUUAGUUCCUAUAGUUAAUAAGUGAAUGUUUUAGUCUUUGAAAUUUACAUUUUAAUGCUCAAAAGAUUCUUACCGUUAAAUUUUUUAACUCUGUAUGGUUAAAGAAUUUUAAUGACAAGGACUUUUUGAAAAUUAAAAUAUAAACUUCAUGAACUAAAAAAUCUACUUAUUAACUAUAGGGACUAAAAGGGAUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762229.1
ncRNA:23   UGAAUAGGGAAAAUCAGGGAUAU   1
  |=||||*|||||||||||=||||
targets:1831   AUUUAUACCUUUUAGUCCUUAUA   1853

2.5 PREDICTED: Glycine max aldose 1-epimerase-like (LOC102668851), transcript variant X2, mRNA aldose 1-epimerase-like(LOC102668851) coding protein psRNATarget
XM_014762228.1
ncRNA:23   UGAAUAGGGAAAAUCAGGGAUAU   1
  |=||||*|||||||||||=||||
targets:1882   AUUUAUACCUUUUAGUCCUUAUA   1904

2.5 PREDICTED: Glycine max aldose 1-epimerase-like (LOC102668851), transcript variant X1, mRNA aldose 1-epimerase-like(LOC102668851) coding protein psRNATarget