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BaseInfo

ncRNA ID novel_gma_miR6301
Species Glycine max
Class miRNA
Genome position Chr1:9379115-9379224 [+]
Reference genome Glycine_max_v2.0
Source SRR1295520
Length 24
Mature sequence(if miRNA) 1 - UAAGACGAUUCCGAGGACAAAACC - 24
Stem-loop(if miRNA) --     CG  UC  A          AU          ----------C   C      G
  UAAGA  AU  CG GGACAAAACC  CUUAGAAUGU           AGA GGUCUU A
  |||||  ||  || ||||||||||  ||||||||||           ||| ||||||
  GUUCU  UA  GU CCUGUUUUGG  GAAUCUUAUA           UCU CCAGAA U
AA     AG  GA  C          CC          UCAUGUAAGAU   A      U
Stem-loop sequence UAAGACGAUUCCGAGGACAAAACCAUCUUAGAAUGUCAGACGGUCUUGAUUAAGACCAUCUUAGAAUGUACUAUAUUCUAAGCCGGUUUUGUCCCUGAGAUGAUCUUGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003518469.3
ncRNA:24   CCAAAAC-AGGAGCCUUAGCAGAAU   1
  |||**||-||||||||||||||||*
targets:303   GGUGCUGGUCCUCGGAAUCGUCUUC   327

3.0 PREDICTED: Glycine max probable galacturonosyltransferase 15 (LOC100794379), transcript variant X1, mRNA probable galacturonosyltransferase 15(LOC100794379) coding protein psRNATarget