ncRNA ID | novel_gma_miR6296 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr15:148707-148885 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1295520 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GAAGGUUGAUUGUCACGUGUCACU - 24 |
Stem-loop(if miRNA) |
--  AG      --                C     A                                ---      A   ACAAUAAUGCA   GA  GUUGAU  UGUCACGUGUCACUUU UUAUU GAUGAUGAUUGUUACGUGUCAUGUUCUGAUUG   GUCAAU GAA           U   ||  ||||||  |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||   |||||| |||   CU  CAACUG  ACAGUGCACAGUGAAA AAUAA CUACUAUUGACAGUGCACAGUACAAGACUAAU   CAGUUG AGG           U CA  -G      CC                A     C                                UUA      -   UACUUUCUACU |
Stem-loop sequence | GAAGGUUGAUUGUCACGUGUCACUUUCUUAUUAGAUGAUGAUUGUUACGUGUCAUGUUCUGAUUGGUCAAUAGAAACAAUAAUGCAUUUCAUCUUUCAUGGAGUUGACAUUUAAUCAGAACAUGACACGUGACAGUUAUCAUCCAAUAAAAAAGUGACACGUGACACCGUCAACGUCAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014762964.1 |
|
2.5 | PREDICTED: Glycine max fasciclin-like arabinogalactan protein 1 (LOC106794953), mRNA | fasciclin-like arabinogalactan protein 1(LOC106794953) | coding protein | psRNATarget |