Search result

BaseInfo

ncRNA ID novel_gma_miR6277
Species Glycine max
Class miRNA
Genome position Chr17:12750597-12750775 [-]
Reference genome Glycine_max_v2.0
Source SRR1295519
Length 24
Mature sequence(if miRNA) 1 - CUAGGAGGAUGAUGAGAUGGACCU - 24
Stem-loop(if miRNA) ---G  -     AC    UG         UU         ---------GU   U   --UAUUCCU        AAUCA    UC   UA     UC  G
    CC UUUCA  CAUU  CUUAGCUAA  GGCCCACCU           ACC CCA         GAUUGCUG     GUAC  UUC  GUGUG  AC U
    || |||||  ||||  |||||||||  |||||||||           ||| |||         ||||||||     ||||  |||  |||||  ||
    GG AGAGU  GUAG  GGAUCGGUU  UUGGGUGGG           UGG GGU         UUAACGAC     CAUG  AAG  UACGU  UG U
UCCA  U     -A    GA         -C         AUGUCCUCUUU   U   UCGUCCUCC        -----    UC   --     -C  A
Stem-loop sequence GCCUUUCAACCAUUUGCUUAGCUAAUUGGCCCACCUGUACCUCCAUAUUCCUGAUUGCUGAAUCAGUACUCUUCUAGUGUGUCACGUUAGUCUGCAUGAACUGUACCAGCAAUUCCUCCUGCUUGGUGGUUUUCUCCUGUAGGGUGGGUUCUUGGCUAGGAGGAUGAUGAGAUGGACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006606798.1
ncRNA:24   UCCAGGUAGAGUAGUAGGAGGAUC   1
  ****||||=||||||||||||||*
targets:246   UAAACCAUUUCAUCAUCCUCCUAC   269

2.0 PREDICTED: Glycine max uncharacterized LOC102668223 (LOC102668223), mRNA uncharacterized LOC102668223(LOC102668223) coding protein psRNATarget