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BaseInfo

ncRNA ID novel_gma_miR6269
Species Glycine max
Class miRNA
Genome position Chr16:9016287-9016347 [+]
Reference genome Glycine_max_v2.0
Source SRR1295519
Length 23
Mature sequence(if miRNA) 39 - AUCAAGUUGAUCCGUAAGUCUCU - 61
Stem-loop(if miRNA) --         A           C      
  AGACUUACG AUCAACUUGAU CGUAAGU
  ||||||||| ||||||||||| ||||||C
  UCUGAAUGC UAGUUGAACUA GCAUUCA
UC         C           A      
Stem-loop sequence AGACUUACGAAUCAACUUGAUCCGUAAGUCACUUACGAAUCAAGUUGAUCCGUAAGUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600975.2
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  |*||*||||||||||||||||||
targets:1245   AAAGCCUUACGGAUCAACUUGAU   1267

1.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_003547498.3
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  |***|||||=|||||||||||||
targets:450   AUCAACUUAUGGAUCAACUUGAU   472

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  |***|||||=|||||||||||||
targets:1045   AUCAACUUAUGGAUCAACUUGAU   1067

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_003547498.3
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  *||*=|*||||||||||||||||
targets:407   UGAAGCAUACGGAUCAACUUGAU   429

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  *||*=|*||||||||||||||||
targets:1002   UGAAGCAUACGGAUCAACUUGAU   1024

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  |*|**=|||||||||||||||||
targets:505   AAAUCUUUACGGAUCAACUUGAU   527

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  |*|||*|||||||||||*|||||
targets:588   AAAGAAUUACGGAUCAAGUUGAU   610

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014779392.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  **|*||*|||||||=||||||||
targets:1553   UUAAACAUACGGAUUAACUUGAU   1575

2.5 PREDICTED: Glycine max actin-related protein 2/3 complex subunit 1B-like (LOC100778212), transcript variant X2, mRNA actin-related protein 2/3 complex subunit 1B-like(LOC100778212) coding protein psRNATarget
XM_003532064.3
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  **|*||*|||||||=||||||||
targets:1661   UUAAACAUACGGAUUAACUUGAU   1683

2.5 PREDICTED: Glycine max actin-related protein 2/3 complex subunit 1B-like (LOC100778212), transcript variant X1, mRNA actin-related protein 2/3 complex subunit 1B-like(LOC100778212) coding protein psRNATarget
XM_014779393.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  **|*||*|||||||=||||||||
targets:3393   UUAAACAUACGGAUUAACUUGAU   3415

2.5 PREDICTED: Glycine max actin-related protein 2/3 complex subunit 1B-like (LOC100778212), transcript variant X3, mRNA actin-related protein 2/3 complex subunit 1B-like(LOC100778212) coding protein psRNATarget
XM_014770919.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  ||***|||==|||||||||||||
targets:2149   AGUUUCUUGUGGAUCAACUUGAU   2171

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X3, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
XM_006602969.2
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  ||***|||==|||||||||||||
targets:2148   AGUUUCUUGUGGAUCAACUUGAU   2170

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X2, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
XM_014770918.1
ncRNA:23   UCUCUGAAUGCCUAGUUGAACUA   1
  ||***|||==|||||||||||||
targets:2148   AGUUUCUUGUGGAUCAACUUGAU   2170

3.0 PREDICTED: Glycine max uncharacterized LOC100800748 (LOC100800748), transcript variant X1, mRNA uncharacterized LOC100800748(LOC100800748) coding protein psRNATarget
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