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BaseInfo

ncRNA ID	ath-miR157c-3p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:6244500-6244716 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	28 - GCUCUCUAUACUUCUGUCACC - 48
Stem-loop(if miRNA)	U     ------U    UU   U  U        -           UAA    G  AUGCAAGUACAUACAUAUAUAUCAUCACACCGCAUGUGGAUGAUAAAAUAUG AGGUU GAGAG       GAUG  GGU GU GACAGAAG AUAGAGAGCAC   GGAU AC                                                    U ||||| |||||       ||||  ||| || |||||||| |||||||||||   |||| ||                                                    A UCCAA CUCUC       CUAU  CCA CA CUGUCUUC UAUCUCUCGUG   UUUU CU                                                    U      U     UUCUUCU    UU   C  -        A           ---    -  CAUCUCUACGUCCAAGAGAGAGAAAGAGAGGGAGAGAAAGAAACUUAAACAA
Stem-loop sequence	AGGUUUGAGAGUGAUGUUGGUUGUUGACAGAAGAUAGAGAGCACUAAGGAUGACAUGCAAGUACAUACAUAUAUAUCAUCACACCGCAUGUGGAUGAUAAAAUAUGUAUAACAAAUUCAAAGAAAGAGAGGGAGAGAAAGAGAGAGAACCUGCAUCUCUACUCUUUUGUGCUCUCUAUACUUCUGUCACCACCUUUAUCUCUUCUUCUCUCUAACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK117945.1	ncRNA:21   CCACUGUCUUCAUAUCUCUCG   1   ||*||||||||||*||||||| targets:521   GGAGACAGAAGUAGAGAGAGC   541 Target Full Sequence	2.5	Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL19-13-I10	NA	coding protein	psRNATarget

Reference

1	PMID:12101121 "MicroRNAs in plants"; Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP; Genes Dev. 16:1616-1626(2002).
2	PMID:12202040 "Prediction of plant microRNA targets"; Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP; Cell. 110:513-520(2002).
3	PMID:16040653 "Expression of Arabidopsis MIRNA genes"; Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC; Plant Physiol. 138:2145-2154(2005).
4	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
5	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
6	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).