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BaseInfo

ncRNA ID novel_gma_miR6219
Species Glycine max
Class miRNA
Genome position Chr6:27819582-27819638 [+]
Reference genome Glycine_max_v2.0
Source SRR1295519;SRR1292928
Length 24
Mature sequence(if miRNA) 1 - AAAUCGUGAUUUUGUUGGCUUGCC - 24
Stem-loop(if miRNA) --                --GG    CCA
  AAAUCGUGAUUUUGUU    CUUG   A
  ||||||||||||||||    ||||   A
  UUUAGCACUAAAACAA    GAGC   A
AC                AAAA    UUA
Stem-loop sequence AAAUCGUGAUUUUGUUGGCUUGCCAAAAAUUCGAGAAAAAACAAAAUCACGAUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003524385.3
ncRNA:24   CCGUUCGGUUGUUUUAGUGCUAAA   1
  **=|*||=||||||||||=|||||
targets:1642   CAUAUGCUAACAAAAUCAUGAUUU   1665

2.5 PREDICTED: Glycine max F-box protein SKIP8 (LOC100807571), mRNA F-box protein SKIP8(LOC100807571) coding protein psRNATarget
XM_003542910.3
ncRNA:24   CCGUUCGGUUGUUUUAGUGCUAAA   1
  ***||||||*||||||||||*|||
targets:1522   AUGAAGCCACCAAAAUCACGUUUU   1545

2.5 PREDICTED: Glycine max RNA-binding KH domain-containing protein PEPPER-like (LOC100802089), transcript variant X1, mRNA RNA-binding KH domain-containing protein PEPPER-like(LOC100802089) coding protein psRNATarget