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BaseInfo

ncRNA ID	novel_gma_miR6215
Species	Glycine max
Class	miRNA
Genome position	Chr5:30257042-30257200 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295519
Length	24
Mature sequence(if miRNA)	1 - GAAGAAGAUCCAAGGCCUAGAAGC - 24
Stem-loop(if miRNA)	--     U    -GU  C       - UG -CUCA    ---        ---CUCAU    UCCUUGAAGUGGCGUCUCCAAU   UUCUA GGUU   GA CUUCUUC U  A     UCUU   CUUCUUGA        CUUC                      C   ||||| ||||   || ||||||| |  |     ||||   ||||||||        ||||                      A   AAGAU CCGG   CU GAAGAAG A  U     AGGA   GAAGAACU        CCGC                      U CG     -    AAC  A       U GU ACAUC    AAC        UCUACUUA    CGCCUUACCUCUUCCUUCUUUC
Stem-loop sequence	UUCUAUGGUUGUGACCUUCUUCUUGACUCAUCUUCUUCUUGACUCAUCUUCUCCUUGAAGUGGCGUCUCCAAUCAUCUUUCUUCCUUCUCCAUUCCGCCGCCAUUCAUCUUCAAGAAGCAAAGGACUACAUUGAUGAAGAAGAUCCAAGGCCUAGAAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003533882.3	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   ||||*||||||||||||||||||| targets:2359   GCUUGUAGGCCUUGGAUCUUCUUC   2382 Target Full Sequence	0.0	PREDICTED: Glycine max probable serine/threonine-protein kinase At1g18390 (LOC100786779), mRNA	probable serine/threonine-protein kinase At1g18390(LOC100786779)	coding protein	psRNATarget
BT091430.1	ncRNA:24   CGAA-GAUCCGGAACCUAGAAGAAG   1   *=||-=||||||||||||||||||| targets:109   AUUUGUUAGGCCUUGGAUCUUCUUC   133 Target Full Sequence	0.0	Soybean clone JCVI-FLGm-7P14 unknown mRNA	NA	coding protein	psRNATarget
NM_001248263.1	ncRNA:24   CGAA-GAUCCGGAACCUAGAAGAAG   1   *=||-=||||||||||||||||||| targets:109   AUUUGUUAGGCCUUGGAUCUUCUUC   133 Target Full Sequence	0.0	Glycine max transposase-associated domain-containing protein (LOC100500496), mRNA	uncharacterized LOC100500496(LOC100500496)	coding protein	psRNATarget
BT098985.1	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   ||||*|||||||*||||||||||| targets:189   GCUUGUAGGCCUAGGAUCUUCUUC   212 Target Full Sequence	1.5	Soybean clone JCVI-FLGm-16F8 unknown mRNA	NA	coding protein	psRNATarget
BT094342.1	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   |||||||||=||||||||||=||| targets:571   GCUUCUAGGUCUUGGAUCUUUUUC   594 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-24D16 unknown mRNA	NA	coding protein	psRNATarget
XM_006573313.2	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   ||||*|||||||*||||||||||= targets:1638   GCUUGUAGGCCUAGGAUCUUCUUU   1661 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102669672 (LOC102669672), mRNA	uncharacterized LOC102669672(LOC102669672)	coding protein	psRNATarget
XM_014771148.1	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   ||||**||||||*||||||||||| targets:1435   GCUUGAAGGCCUAGGAUCUUCUUC   1458 Target Full Sequence	2.5	PREDICTED: Glycine max putative quinone-oxidoreductase homolog, chloroplastic (LOC100782744), transcript variant X2, mRNA	putative quinone-oxidoreductase homolog, chloroplastic(LOC100782744)	coding protein	psRNATarget
XM_014771147.1	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   ||||**||||||*||||||||||| targets:1569   GCUUGAAGGCCUAGGAUCUUCUUC   1592 Target Full Sequence	2.5	PREDICTED: Glycine max putative quinone-oxidoreductase homolog, chloroplastic (LOC100782744), transcript variant X1, mRNA	putative quinone-oxidoreductase homolog, chloroplastic(LOC100782744)	coding protein	psRNATarget
AK285941.1	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   **|*=|||||=||||||*|||||| targets:1516   AAUAUUAGGCUUUGGAUAUUCUUC   1539 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-18-P10	NA	coding protein	psRNATarget
XM_003531317.3	ncRNA:24   CGAAGAUCCGGAACCUAGAAGAAG   1   **|*=|||||=||||||*|||||| targets:1646   AAUAUUAGGCUUUGGAUAUUCUUC   1669 Target Full Sequence	2.5	PREDICTED: Glycine max bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase (LOC100776446), mRNA	bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase(LOC100776446)	coding protein	psRNATarget