Search result

BaseInfo

ncRNA ID	novel_gma_miR6170
Species	Glycine max
Class	miRNA
Genome position	Chr14:20189049-20189200 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835773
Length	24
Mature sequence(if miRNA)	129 - AAUGUAGACAUUCUAAGACGGUUC - 152
Stem-loop(if miRNA)	--              C     A         UUUUUUU            C       A   ------   U      ACA   ACCGUCUUAGAAUG CUACA UCUAAGAUG       UUUUUCAAAGAA CGUCUUA AAU      AUU UUUUAA   A   |||||||||||||| ||||| |||||||||       |||||||||||| ||||||| |||      ||| ||||||   UGGCAGAAUCUUAC GAUGU AGAUUUUGC       AAAAAGUUUUUU GCAGAAU UUA      UAA AAAAUU   A CU              A     A         ------U            A       C   GAAGUU   U      AAA
Stem-loop sequence	ACCGUCUUAGAAUGCCUACAAUCUAAGAUGUUUUUUUUUUUUCAAAGAACCGUCUUAAAAUAUUUUUUUAAACAAAAAAUUAAAAUAAUUUGAAGAUUCUAAGACGAUUUUUUGAAAAAUCGUUUUAGAAUGUAGACAUUCUAAGACGGUUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763138.1	ncRNA:24   CUUGGCAGAAUCUUACAGAUGUAA   1   ||||||||||||||||||||=||| targets:1434   GAACCGUCUUAGAAUGUCUAUAUU   1457 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X3, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
XM_006589010.2	ncRNA:24   CUUGGCAGAAUCUUACAGAUGUAA   1   ||||||||||||||||||||=||| targets:2143   GAACCGUCUUAGAAUGUCUAUAUU   2166 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100806242 (LOC100806242), transcript variant X2, mRNA	uncharacterized LOC100806242(LOC100806242)	coding protein	psRNATarget
NM_001349797.1	ncRNA:24   CUUGGCAGAAUCUUACAGAUGUAA   1   *=|==||=||||||||||*||||| targets:546   UGAUUGUUUUAGAAUGUCGACAUU   569 Target Full Sequence	2.5	Glycine max DNA-directed RNA polymerase subunit 10-like protein (LOC100500450), transcript variant 2, mRNA	NA	coding protein	psRNATarget
BT091382.1	ncRNA:24   CUUGGCAGAAUCUUACAGAUGUAA   1   *=|==||=||||||||||*||||| targets:548   UGAUUGUUUUAGAAUGUCGACAUU   571 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-7H20 unknown mRNA	NA	coding protein	psRNATarget
NM_001349796.1	ncRNA:24   CUUGGCAGAAUCUUACAGAUGUAA   1   *=|==||=||||||||||*||||| targets:642   UGAUUGUUUUAGAAUGUCGACAUU   665 Target Full Sequence	2.5	Glycine max DNA-directed RNA polymerase subunit 10-like protein (LOC100500450), transcript variant 1, mRNA	NA	coding protein	psRNATarget