Search result

BaseInfo

ncRNA ID novel_gma_miR6163
Species Glycine max
Class miRNA
Genome position Chr5:4189222-4189361 [+]
Reference genome Glycine_max_v2.0
Source SRR835772
Length 24
Mature sequence(if miRNA) 117 - AAUACGAGAACAGCUUGAAAACGA - 140
Stem-loop(if miRNA) --CUUUC               CUU              A                      C    AAU
       CAAGUUGUUCUUGUG   UUCUUUUAAAACUA GUCGUUUUGAGAGUUGUGUUAA AUUU   U
       |||||||||||||||   |||||||||||||| |||||||||||||||||||||| ||||
       GUUCGACAAGAGCAU   AAGGAAGUUUUGAU CAGCAAAACUUUUAACACAAUU UAAA   A
AGCAAAA               AAU              G                      A    AGU
Stem-loop sequence CUUUCCAAGUUGUUCUUGUGCUUUUCUUUUAAAACUAAGUCGUUUUGAGAGUUGUGUUAACAUUUAAUUAUGAAAAUAUUAACACAAUUUUCAAAACGACGUAGUUUUGAAGGAAUAAUACGAGAACAGCUUGAAAACGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776853.1
ncRNA:24   AGCAAAAGUUCGACAAGAGCAUAA   1
  *|*||||*||||||||||||||*|
targets:2568   CCCUUUUGAAGCUGUUCUCGUACU   2591

2.5 PREDICTED: Glycine max protein argonaute 4A-like (LOC100812218), mRNA protein argonaute 4A-like(LOC100812218) coding protein psRNATarget