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BaseInfo

ncRNA ID novel_gma_miR6143
Species Glycine max
Class miRNA
Genome position Chr17:10821142-10821189 [+]
Reference genome Glycine_max_v2.0
Source SRR835772
Length 21
Mature sequence(if miRNA) 28 - UGGAAGUAAUGAGACUUAGCA - 48
Stem-loop(if miRNA) --    A      - G      GA
  UUGA UCUCAU G UUUCGU  A
  |||| |||||| | ||||||  G
  GAUU AGAGUA U AAGGUA  G
AC    C      A G      AA
Stem-loop sequence UUGAAUCUCAUGGUUUCGUGAAGGAAAUGGAAGUAAUGAGACUUAGCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014764111.1
ncRNA:21   ACGAUUCAGAGUAAUGAAGGU   1
  |||||||||||||||||||||
targets:7292   UGCUAAGUCUCAUUACUUCCA   7312

0.0 PREDICTED: Glycine max uncharacterized LOC106795195 (LOC106795195), transcript variant X2, mRNA uncharacterized LOC106795195(LOC106795195) coding protein psRNATarget
XM_014764110.1
ncRNA:21   ACGAUUCAGAGUAAUGAAGGU   1
  |||||||||||||||||||||
targets:7421   UGCUAAGUCUCAUUACUUCCA   7441

0.0 PREDICTED: Glycine max uncharacterized LOC106795195 (LOC106795195), transcript variant X1, mRNA uncharacterized LOC106795195(LOC106795195) coding protein psRNATarget
XM_003518442.3
ncRNA:21   ACGAUUCAGAGUAAUGAAGGU   1
  |||*|*|*|||||||||||||
targets:2180   UGCCAUGGCUCAUUACUUCCA   2200

3.0 PREDICTED: Glycine max DEAD-box ATP-dependent RNA helicase 53 (LOC100778436), mRNA DEAD-box ATP-dependent RNA helicase 53(LOC100778436) coding protein psRNATarget