Search result

BaseInfo

ncRNA ID novel_gma_miR6133
Species Glycine max
Class miRNA
Genome position Chr19:689540-689682 [+]
Reference genome Glycine_max_v2.0
Source SRR835771
Length 24
Mature sequence(if miRNA) 120 - AGGGACAACACAAACAUUCAGCAU - 143
Stem-loop(if miRNA) --    --UU                          C  AUUAAAAAUCUCU        G    A       U
  GUUG    UUUGUGUUGUUCCUCCAAAAUGACGU GU             AAAAUGAC UUGU UUAAAAG U
  ||||    |||||||||||||||||||||||||| ||             |||||||| |||| ||||||| G
  CGAC    AAACACAACAGGGAGGUUUUACUGCA CA             UUUUGCUG AACA AAUUUUC U
UA    UUAC                          U  ----AAACUAAUU        G    A       A
Stem-loop sequence GUUGUUUUUGUGUUGUUCCUCCAAAAUGACGUCGUAUUAAAAAUCUCUAAAAUGACGUUGUAUUAAAAGUUGUACUUUUAAAACAAGGUCGUUUUUUAAUCAAAACUACGUCAUUUUGGAGGGACAACACAAACAUUCAGCAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003519481.3
ncRNA:24   UACGACU-UACAAACACAACAGGGA   1
  |||--||-|||*|||||||||||||
targets:969   AUG--GACAUGAUUGUGUUGUCCCU   991

3.0 PREDICTED: Glycine max protein ALTERED XYLOGLUCAN 4-like (LOC100814460), mRNA protein ALTERED XYLOGLUCAN 4-like(LOC100814460) coding protein psRNATarget