Search result

BaseInfo

ncRNA ID	novel_gma_miR6119
Species	Glycine max
Class	miRNA
Genome position	Chr17:4587042-4587170 [-]
Reference genome	Glycine_max_v2.0
Source	SRR835771
Length	21
Mature sequence(if miRNA)	109 - UGAAGGUAGGGAGAGUAGAUU - 129
Stem-loop(if miRNA)	--   -  -      A        U      A        U         -      AAA   AAAA   UGA AG GUAGGG GAGUAGAU UGAGCC GGAUGGCU GCCGGCAUA UGCUUA   GCA    G   ||| || |||||| |||||||| |||||| |||||||| ||||||||| ||||||   |||    A   ACU UC CAUUUC CUUGUUUA ACUCGG CCUACCGG UGGUCGUAU AUGGGU   CGU    U GU   C  A      C        U      A        -         U      --G   CCCC
Stem-loop sequence	UGAAGGUAGGGAGAGUAGAUUUGAGCCAGGAUGGCUUGCCGGCAUAUGCUUAAAAGCAAAAAGAUCCCCUGCGUGGGUAUUAUGCUGGUGGCCAUCCAGGCUCAUAUUUGUUCCCUUUACACUCUCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
KM400490.1	ncRNA:21   UUAGAUGAGAGGGAUGGAAGU   1   **|=|*||||||||||||||| targets:2060   CCUUUCCUCUCCCUACCUUCA   2080 Target Full Sequence	2.0	Glycine max embryo yellow protein mRNA, partial cds	NA	coding protein	psRNATarget
XM_003534319.3	ncRNA:21   UUAGAUGAGAGGGAUGGAAGU   1   **|=|*||||||||||||||| targets:2191   CCUUUCCUCUCCCUACCUUCA   2211 Target Full Sequence	2.0	PREDICTED: Glycine max conserved oligomeric Golgi complex subunit 7-like (LOC100796129), mRNA	conserved oligomeric Golgi complex subunit 7-like(LOC100796129)	coding protein	psRNATarget
XM_006587063.2	ncRNA:21   UUAGAUGAGAGGGAUGGAAGU   1   ***||=||||||||||||||* targets:879   CUGCUGCUCUCCCUACCUUCC   899 Target Full Sequence	3.0	PREDICTED: Glycine max putative ALA-interacting subunit 2 (LOC100789806), transcript variant X3, mRNA	putative ALA-interacting subunit 2(LOC100789806)	coding protein	psRNATarget
XM_003533804.3	ncRNA:21   UUAGAUGAGAGGGAUGGAAGU   1   ***||=||||||||||||||* targets:1075   CUGCUGCUCUCCCUACCUUCC   1095 Target Full Sequence	3.0	PREDICTED: Glycine max putative ALA-interacting subunit 2 (LOC100789806), transcript variant X2, mRNA	putative ALA-interacting subunit 2(LOC100789806)	coding protein	psRNATarget
XM_006587062.2	ncRNA:21   UUAGAUGAGAGGGAUGGAAGU   1   ***||=||||||||||||||* targets:1080   CUGCUGCUCUCCCUACCUUCC   1100 Target Full Sequence	3.0	PREDICTED: Glycine max putative ALA-interacting subunit 2 (LOC100789806), transcript variant X1, mRNA	putative ALA-interacting subunit 2(LOC100789806)	coding protein	psRNATarget