Search result

BaseInfo

ncRNA ID	novel_gma_miR6094
Species	Glycine max
Class	miRNA
Genome position	Chr13:27626569-27626655 [-]
Reference genome	Glycine_max_v2.0
Source	SRR835771
Length	21
Mature sequence(if miRNA)	67 - AGAAUUGGAAUUUUACCUCAG - 87
Stem-loop(if miRNA)	--         A        CA       AUAUAA        CCA   AGAAUUGGA UUUUACCU  GUAAUCU      UAAAAUCU   U   ||||||||| ||||||||  |||||||      ||||||||   UCUUAACUU AAAAUGGA  CAUUAGG      GUUUUAGA   U AG         C        AA       -----C        AAA
Stem-loop sequence	AGAAUUGGAAUUUUACCUCAGUAAUCUAUAUAAUAAAAUCUCCAUUAAAAGAUUUUGCGGAUUACAAAGGUAAAACUUCAAUUCUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003544018.3	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   =||||||||||||=||||||| targets:1245   UUGAGGUAAAAUUUCAAUUCU   1265 Target Full Sequence	1.5	PREDICTED: Glycine max LOB domain-containing protein 21-like (LOC100777635), mRNA	LOB domain-containing protein 21-like(LOC100777635)	coding protein	psRNATarget
XM_003550155.3	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   *||||||||||||=||||||| targets:1045   AUGAGGUAAAAUUUCAAUUCU   1065 Target Full Sequence	1.5	PREDICTED: Glycine max protein PPLZ02-like (LOC100785918), mRNA	protein PPLZ02-like(LOC100785918)	coding protein	psRNATarget
XM_003519237.3	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   =||||||=|||||=||||||| targets:1774   UUGAGGUGAAAUUUCAAUUCU   1794 Target Full Sequence	2.5	PREDICTED: Glycine max tyrosine--tRNA ligase, chloroplastic/mitochondrial-like (LOC100813016), mRNA	tyrosine--tRNA ligase, chloroplastic/mitochondrial-like(LOC100813016)	coding protein	psRNATarget
XM_006581801.2	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   |||||||=||*|||||||||| targets:1877   CUGAGGUGAACUUCCAAUUCU   1897 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100819515 (LOC100819515), mRNA	uncharacterized LOC100819515(LOC100819515)	coding protein	psRNATarget
XM_014766389.1	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   =*|||||||||||||||||** targets:3460   UGGAGGUAAAAUUCCAAUUGA   3480 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793802 (LOC100793802), transcript variant X2, mRNA	uncharacterized LOC100793802(LOC100793802)	coding protein	psRNATarget
XM_006593814.2	ncRNA:21   GACUCCAUUUUAAGGUUAAGA   1   =*|||||||||||||||||** targets:3535   UGGAGGUAAAAUUCCAAUUGA   3555 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100793802 (LOC100793802), transcript variant X1, mRNA	uncharacterized LOC100793802(LOC100793802)	coding protein	psRNATarget