Search result

BaseInfo

ncRNA ID novel_gma_miR6079
Species Glycine max
Class miRNA
Genome position Chr9:5333811-5333928 [+]
Reference genome Glycine_max_v2.0
Source SRR835771;SRR1451619
Length 23
Mature sequence(if miRNA) 1 - UGAAGAGGUAGAGGGAGUGCUUU - 23
Stem-loop(if miRNA) UGAA    -U        UG UUU         G   A        GGUAAGUA        U
    GAGG  AGAGGGAG  C   UGAGCCAAG AUG CUUGCCGG        UGAUAUCU C
    ||||  ||||||||  |   ||||||||| ||| ||||||||        |||||||| U
    CUCC  UUUCUCUC  G   ACUUGGUUC UAC GAGCGGCC        GUUAUGGG U
-AUA    CC        GU UUU         -   A        --------        A
Stem-loop sequence UGAAGAGGUAGAGGGAGUGCUUUUGAGCCAAGGAUGACUUGCCGGGGUAAGUAUGAUAUCUUCUUAGGGUAUUGCCGGCGAGACAUCUUGGUUCAUUUGUGCUCUCUUUCCCCUCAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003536985.3
ncRNA:23   UUUCGUGAGGGAGAUGGAGAAGU   1
  *||*||=|*||||||||||||||
targets:1093   CAAUCAUUGCCUCUACCUCUUCA   1115

2.0 PREDICTED: Glycine max protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like (LOC100803605), mRNA protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like(LOC100803605) coding protein psRNATarget