ncRNA ID | novel_gma_miR6079 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr9:5333811-5333928 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835771;SRR1451619 |
Length | 23 |
Mature sequence(if miRNA) | 1 - UGAAGAGGUAGAGGGAGUGCUUU - 23 |
Stem-loop(if miRNA) |
UGAA    -U        UG UUU         G   A        GGUAAGUA        U     GAGG  AGAGGGAG  C   UGAGCCAAG AUG CUUGCCGG        UGAUAUCU C     ||||  ||||||||  |   ||||||||| ||| ||||||||        |||||||| U     CUCC  UUUCUCUC  G   ACUUGGUUC UAC GAGCGGCC        GUUAUGGG U -AUA    CC        GU UUU         -   A        --------        A |
Stem-loop sequence | UGAAGAGGUAGAGGGAGUGCUUUUGAGCCAAGGAUGACUUGCCGGGGUAAGUAUGAUAUCUUCUUAGGGUAUUGCCGGCGAGACAUCUUGGUUCAUUUGUGCUCUCUUUCCCCUCAUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003536985.3 |
|
2.0 | PREDICTED: Glycine max protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like (LOC100803605), mRNA | protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4-like(LOC100803605) | coding protein | psRNATarget |