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BaseInfo

ncRNA ID novel_gma_miR6076
Species Glycine max
Class miRNA
Genome position Chr9:27728608-27728769 [-]
Reference genome Glycine_max_v2.0
Source SRR835771
Length 22
Mature sequence(if miRNA) 141 - CUAAGCACAUGGUUACACCAAU - 162
Stem-loop(if miRNA) --   A      GGU     -  A      -----------     U  UAUU          -UGAAAC      ---G  A   AA  U
  CUA GCACAU   UACAC CA UGAGCA           CUGCU GU    UAGAUAAAGA       CGGUCA    UC AUA  UG U
  ||| ||||||   ||||| || ||||||           ||||| ||    ||||||||||       ||||||    || |||  || A
  GAU CGUGUG   AUGUG GU AUUUGU           GACGA CG    AUUUAUUUCU       GCUAGU    AG UGU  AC A
UA   -      --U     U  G      AAUAUAGUCCA     U  -UCU          UCCCUAA      AUGG  C   -A  G
Stem-loop sequence CUAAGCACAUGGUUACACCAAUGAGCACUGCUUGUUAUUUAGAUAAAGAUGAAACCGGUCAGUCAAUAAAUGUUAAGCAAUGUCGAGGUAUGAUCGAAUCCCUUCUUUAUUUAUCUGCUAGCAGACCUGAUAUAAUGUUUAGUGUGUGUAUGUGUGCUAGAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583076.2
ncRNA:22   UAACCACAUUGGUACACGAAUC   1
  **||||*|=||||||||||||*
targets:2665   UCUGGUUUGACCAUGUGCUUAU   2686

3.0 PREDICTED: Glycine max stress response protein NST1-like (LOC100796971), transcript variant X1, mRNA stress response protein NST1-like(LOC100796971) coding protein psRNATarget
XM_014777686.1
ncRNA:22   UAACCACAUUGGUACACGAAUC   1
  **||||*|=||||||||||||*
targets:2595   UCUGGUUUGACCAUGUGCUUAU   2616

3.0 PREDICTED: Glycine max stress response protein NST1-like (LOC100796971), transcript variant X2, mRNA stress response protein NST1-like(LOC100796971) coding protein psRNATarget