Search result

BaseInfo

ncRNA ID	novel_gma_miR6055
Species	Glycine max
Class	miRNA
Genome position	Chr6:7008004-7008093 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295518
Length	24
Mature sequence(if miRNA)	67 - CUUCUUAGAAUUUGGACUUGGGCC - 90
Stem-loop(if miRNA)	---CU       A     AC     C         -   ----U  AA      UCUUAGA UUUGG  UUGGG CUAACUCAA CCU     GC  A      ||||||| |||||  ||||| ||||||||| |||     ||      AGAAUCU AAACC  AACCC GAUUGAGUU GGG     CG  C AUGGU       A     CA     A         A   UGAUU  AU
Stem-loop sequence	CUUCUUAGAAUUUGGACUUGGGCCUAACUCAACCUUGCAAACUAGCUUAGUGGGAUUGAGUUAGACCCAAACCCAAAAUCUAAGAUGGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003555110.3	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   ***=|||||||||||*|||||||| targets:2509   CAGUCAAGUCCAAAUGCUAAGAAG   2532 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100816987 (LOC100816987), mRNA	uncharacterized LOC100816987(LOC100816987)	coding protein	psRNATarget
XM_014767107.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2390   ACCCUAAGUCCAAAUUCUAAUAAU   2413 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X8, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_006596327.2	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2489   ACCCUAAGUCCAAAUUCUAAUAAU   2512 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X7, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_014767106.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2492   ACCCUAAGUCCAAAUUCUAAUAAU   2515 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X6, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_014767105.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2528   ACCCUAAGUCCAAAUUCUAAUAAU   2551 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X5, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_006596325.2	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2531   ACCCUAAGUCCAAAUUCUAAUAAU   2554 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X3, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_014767104.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2531   ACCCUAAGUCCAAAUUCUAAUAAU   2554 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X4, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_014767102.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2534   ACCCUAAGUCCAAAUUCUAAUAAU   2557 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X1, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
XM_014767103.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=|||||||||||||||*||* targets:2632   ACCCUAAGUCCAAAUUCUAAUAAU   2655 Target Full Sequence	2.5	PREDICTED: Glycine max MADS-box transcription factor 23-like (LOC100812413), transcript variant X2, mRNA	MADS-box transcription factor 23-like(LOC100812413)	coding protein	psRNATarget
KT031117.1	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=||*||||||||||||*||| targets:493   AACCUAAUUCCAAAUUCUAACAAG   516 Target Full Sequence	2.5	Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds	NA	coding protein	psRNATarget
XM_006573577.2	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=||*||||||||||||*||| targets:678   AACCUAAUUCCAAAUUCUAACAAG   701 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor SPATULA (LOC100797351), transcript variant X2, mRNA	transcription factor SPATULA(LOC100797351)	coding protein	psRNATarget
XM_003516553.3	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=||*||||||||||||*||| targets:674   AACCUAAUUCCAAAUUCUAACAAG   697 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor SPATULA (LOC100797351), transcript variant X1, mRNA	transcription factor SPATULA(LOC100797351)	coding protein	psRNATarget
XM_006590591.2	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=||*||||||||||||*||| targets:702   AACCUAAUUCCAAAUUCUAACAAG   725 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor SPATULA-like (LOC100793754), transcript variant X2, mRNA	transcription factor SPATULA-like(LOC100793754)	coding protein	psRNATarget
XM_003539307.3	ncRNA:24   CCGGGUUCAGGUUUAAGAUUCUUC   1   **||=||*||||||||||||*||| targets:696   AACCUAAUUCCAAAUUCUAACAAG   719 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor SPATULA-like (LOC100793754), transcript variant X1, mRNA	transcription factor SPATULA-like(LOC100793754)	coding protein	psRNATarget