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BaseInfo

ncRNA ID	novel_gma_miR6041
Species	Glycine max
Class	miRNA
Genome position	Chr2:6002286-6002341 [-]
Reference genome	Glycine_max_v2.0
Source	SRR835771
Length	24
Mature sequence(if miRNA)	1 - CUCGCAGAACCAAAGAAAACUCAC - 24
Stem-loop(if miRNA)	--A         -GU          CUU    GGUUUUCUU   UUCUGCGAGG   A    |||||||||   ||||||||||   A    UCAAAAGAA   AAGACGCUCC   G CAC         ACC          AAA
Stem-loop sequence	AGGUUUUCUUGUUUCUGCGAGGCUUAAGAAACCUCGCAGAACCAAAGAAAACUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT096804.1	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:330   GCAUAUUUUAUUUGGUUCUGCGAG   353 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-25F10 unknown mRNA	NA	coding protein	psRNATarget
AB007503.1	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:311   GCAUAUUUUAUUUGGUUCUGCGAG   334 Target Full Sequence	1.0	Glycine max mRNA for squalene synthase, complete cds	NA	coding protein	psRNATarget
AK245602.1	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:332   GCAUAUUUUAUUUGGUUCUGCGAG   355 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-35-C18	NA	coding protein	psRNATarget
AK243811.1	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:425   GCAUAUUUUAUUUGGUUCUGCGAG   448 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-01-F04	NA	coding protein	psRNATarget
NM_001352036.1	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:453   GCAUAUUUUAUUUGGUUCUGCGAG   476 Target Full Sequence	1.0	Glycine max squalene synthase (LOC547940), transcript variant 2, mRNA	NA	coding protein	psRNATarget
NM_001249436.2	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:453   GCAUAUUUUAUUUGGUUCUGCGAG   476 Target Full Sequence	1.0	Glycine max squalene synthase (LOC547940), transcript variant 1, mRNA	squalene synthase(LOC547940)	coding protein	psRNATarget
XM_003537794.3	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:464   GCAUAUUUUAUUUGGUUCUGCGAG   487 Target Full Sequence	1.0	PREDICTED: Glycine max squalene synthase (LOC100775983), transcript variant X1, mRNA	squalene synthase(LOC100775983)	coding protein	psRNATarget
XM_006590808.2	ncRNA:24   CACUCAAAAGAAACCAAGACGCUC   1   |****||||*|||||||||||||| targets:464   GCAUAUUUUAUUUGGUUCUGCGAG   487 Target Full Sequence	1.0	PREDICTED: Glycine max squalene synthase (LOC100775983), transcript variant X2, mRNA	squalene synthase(LOC100775983)	coding protein	psRNATarget