ncRNA ID | novel_gma_miR6023 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr2:32230638-32230859 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835770;SRR835773 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UGGAACAAAUAGUAGAUAUAGAAU - 24 |
Stem-loop(if miRNA) |
--U                    A          A                                                     C             GUAAAC   UU    GGAACAAAUAGUAGAUAUAG AUCUAAUAUU ACAUUGGAUCAAAUUCUAGGAUAGAUUCUCUUAAUCCUAGACAAUUAUACAAC UAAACUGGUUUGU      UAG  C    |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      |||    CCUUGUUUAUCAUCUAUGUU UAGAUUAUAA UGUAACCUAGUUUAAGAUCCUAUCUAAGAGAGUUAGGAUCUGUUAAUAUGUUG AUUUGACCAAACG      GUC  U UGC                    A          C                                                     A             ----AA   UA |
Stem-loop sequence | UGGAACAAAUAGUAGAUAUAGAAUCUAAUAUUAACAUUGGAUCAAAUUCUAGGAUAGAUUCUCUUAAUCCUAGACAAUUAUACAACCUAAACUGGUUUGUGUAAACUAGUUCUAUCUGAAGCAAACCAGUUUAAGUUGUAUAAUUGUCUAGGAUUGAGAGAAUCUAUCCUAGAAUUUGAUCCAAUGUCAAUAUUAGAUAUUGUAUCUACUAUUUGUUCCCGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003536455.3 |
|
2.5 | PREDICTED: Glycine max protein GFS12-like (LOC100809116), mRNA | protein GFS12-like(LOC100809116) | coding protein | psRNATarget |