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BaseInfo

ncRNA ID novel_gma_miR6020
Species Glycine max
Class miRNA
Genome position Chr11:28901548-28901674 [+]
Reference genome Glycine_max_v2.0
Source SRR835770
Length 24
Mature sequence(if miRNA) 1 - AACUGAUGUUGUAAGUGCUUAACG - 24
Stem-loop(if miRNA) --                     -            GUC        A       ----CA   CG
  AACUGAUGUUGUAAGUGCUUA ACGAUAUUGGUU   AAAUAACC AUGUUAA      ACU  A
  ||||||||||||||||||||| ||||||||||||   |||||||| |||||||      |||
  UUGGCUACAACAUUCACGAAU UGCUAUAGCCAA   UUUAUUGG UACAAUU      UGA  U
UU                     C            AAU        C       UUAACG   UU
Stem-loop sequence AACUGAUGUUGUAAGUGCUUAACGAUAUUGGUUGUCAAAUAACCAAUGUUAACAACUCGAUUUAGUGCAAUUUUAACAUCGGUUAUUUUAAAACCGAUAUCGUCUAAGCACUUACAACAUCGGUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014776578.1
ncRNA:24   GCAAUUCGUGAAUGUUGUAGUCAA   1
  ||||||*=||||||||||||||||
targets:1618   CGUUAAAUACUUACAACAUCAGUU   1641

2.0 PREDICTED: Glycine max ankyrin repeat and SOCS box protein 7-like (LOC100786031), transcript variant X1, mRNA ankyrin repeat and SOCS box protein 7-like(LOC100786031) coding protein psRNATarget