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BaseInfo

ncRNA ID novel_gma_miR6019
Species Glycine max
Class miRNA
Genome position Chr4:51943878-51943973 [+]
Reference genome Glycine_max_v2.0
Source SRR1295518
Length 24
Mature sequence(if miRNA) 1 - AGAAUGCGUUUGGAUAGAGAAUUU - 24
Stem-loop(if miRNA) -    U     UG     A         -----   AGGAAAGAAAUUUA
 AGAA GCGUU  GAUAG GAAUUUUAA     CUG              U
 |||| |||||  ||||| |||||||||     |||
 UUUU CGUAG  UUGUU CUUAAGAUU     UUU              C
A    U     GU     A         UAAUG   UUAAGUUUAAGAGA
Stem-loop sequence AGAAUGCGUUUGGAUAGAGAAUUUUAACUGAGGAAAGAAAUUUAUCAGAGAAUUUGAAUUUUUGUAAUUUAGAAUUCAUUGUUUGGAUGCUUUUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287089.1
ncRNA:24   UUUAAGAGAUAGGUUUGCGUAAGA   1
  *|*|||||||||||||||||||*|
targets:87   UAUUUCUCUAUCCAAACGCAUUAU   110

1.5 Glycine max cDNA, clone: GMFL01-43-O04 NA coding protein psRNATarget
XM_003544879.3
ncRNA:24   UUUAAGAGAUAGGUUUGCGUAAGA   1
  *|*|||||||||||||||||||*|
targets:115   UAUUUCUCUAUCCAAACGCAUUAU   138

1.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 11 (LOC100815088), mRNA CBL-interacting serine/threonine-protein kinase 11(LOC100815088) coding protein psRNATarget
BT099387.1
ncRNA:24   UUUAAGAGAUAGGUUUGCGUAAGA   1
  ***||||*||||||||||||*|||
targets:14   UUUUUCUAUAUCCAAACGCACUCU   37

2.5 Soybean clone JCVI-FLGm-23J16 unknown mRNA NA coding protein psRNATarget