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BaseInfo

ncRNA ID novel_gma_miR5983
Species Glycine max
Class miRNA
Genome position Chr18:9558704-9558770 [-]
Reference genome Glycine_max_v2.0
Source SRR835768
Length 21
Mature sequence(if miRNA) 1 - UUUGGAUAGCAGAUUGAAUUU - 21
Stem-loop(if miRNA) --   UG     -G         -----       G
  AUU  AUUUG  AUUUAGAUU     UGAUUUG A
  |||  |||||  |||||||||     ||||||| U
  UAA  UAGAC  UAGGUUUAG     AUUAGAC A
UU   GU     GA         UUCAG       A
Stem-loop sequence AUUUGAUUUGGAUUUAGAUUUGAUUUGGAUAACAGAUUAGACUUGAUUUGGAUAGCAGAUUGAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006587120.2
ncRNA:21   UUUAAGU--UAGACGAUAGGUUU   1
  |*|||||--||||||||||||||
targets:1072   AUAUUCAGGAUCUGCUAUCCAAA   1094

2.5 PREDICTED: Glycine max histone-lysine N-methyltransferase ATXR4 (LOC100801270), transcript variant X4, mRNA histone-lysine N-methyltransferase ATXR4(LOC100801270) coding protein psRNATarget