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BaseInfo

ncRNA ID novel_gma_miR5974
Species Glycine max
Class miRNA
Genome position Chr16:17521913-17522026 [+]
Reference genome Glycine_max_v2.0
Source SRR835768
Length 24
Mature sequence(if miRNA) 91 - AAUAGAACCUACCCGAUGUCGGCU - 114
Stem-loop(if miRNA) --      C   C    A   UUUCGAA             -----------    -  UUUU
  CCGACA CGG UAGG UCU       CGACAUUGACCAA           GGCU AC    A
  |||||| ||| |||| |||       |||||||||||||           |||| ||    G
  GGCUGU GCC AUCC AGA       GCUGUAGCUGGUU           CCGA UG    U
UC      A   C    A   -UAACCA             UGAUAAAAAAA    C  CAAC
Stem-loop sequence CCGACACCGGCUAGGAUCUUUUCGAACGACAUUGACCAAGGCUACUUUUAGUCAACGUCAGCCAAAAAAAUAGUUUGGUCGAUGUCGACCAAUAGAACCUACCCGAUGUCGGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003540848.3
ncRNA:24   UCGGCUGUAGCCCAUCCAAGAUAA   1
  *|=**|=|||||||||||||*|||
targets:1391   UGUAUAUAUCGGGUAGGUUCAAUU   1414

2.5 PREDICTED: Glycine max uncharacterized LOC100799220 (LOC100799220), mRNA uncharacterized LOC100799220(LOC100799220) coding protein psRNATarget