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BaseInfo

ncRNA ID novel_gma_miR5956
Species Glycine max
Class miRNA
Genome position Chr2:27006630-27006762 [-]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 21
Mature sequence(if miRNA) 113 - UGAGGGUUGUGGAGAUGAUGG - 133
Stem-loop(if miRNA) -UGAGGGUUG  GA          ------    -U  A       --GG    U   A   -UA      G
          UG  GAUGAUGGUU      GUGG  UG GGAAUAA    UUAG AAC ACA   GAAUUC G
          ||  ||||||||||      ||||  || |||||||    |||| ||| |||   ||||||
          GC  UUACUACUAG      CGCC  AC CUUUGUU    GAUC UUG UGU   CUUAAG C
GUGUUGAUAA  UG          AGUCUC    UU  -       AACA    -   G   UAA      A
Stem-loop sequence UGAGGGUUGUGGAGAUGAUGGUUGUGGUUGAGGAAUAAGGUUAGUAACAACAUAGAAUUCGGCAGAAUUCAAUUGUGGUUCUAGACAAUUGUUUCCAUUCCGCCUCUGAGAUCAUCAUUGUCGAAUAGUUGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771454.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:1755   CCAUCGUCUCCACAACCCUCA   1775

1.0 PREDICTED: Glycine max uncharacterized LOC106797229 (LOC106797229), mRNA uncharacterized LOC106797229(LOC106797229) coding protein psRNATarget
XM_014762313.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:1754   CCAUCGUCUCCACAACCCUCA   1774

1.0 PREDICTED: Glycine max uncharacterized LOC106794650 (LOC106794650), mRNA uncharacterized LOC106794650(LOC106794650) coding protein psRNATarget
XM_014764207.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:1119   CCAUCGUCUCCACAACCCUCA   1139

1.0 PREDICTED: Glycine max uncharacterized LOC106795206 (LOC106795206), mRNA uncharacterized LOC106795206(LOC106795206) coding protein psRNATarget
XM_014767141.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:1043   CCAUCGUCUCCACAACCCUCA   1063

1.0 PREDICTED: Glycine max uncharacterized LOC106796009 (LOC106796009), mRNA uncharacterized LOC106796009(LOC106796009) coding protein psRNATarget
XM_014774577.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:518   CCAUCGUCUCCACAACCCUCA   538

1.0 PREDICTED: Glycine max uncharacterized LOC106798386 (LOC106798386), mRNA uncharacterized LOC106798386(LOC106798386) coding protein psRNATarget
XM_014762093.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:564   CCAUCGUCUCCACAACCCUCA   584

1.0 PREDICTED: Glycine max uncharacterized LOC106794574 (LOC106794574), mRNA uncharacterized LOC106794574(LOC106794574) coding protein psRNATarget
XM_014762198.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:438   CCAUCGUCUCCACAACCCUCA   458

1.0 PREDICTED: Glycine max uncharacterized LOC106794611 (LOC106794611), mRNA uncharacterized LOC106794611(LOC106794611) coding protein psRNATarget
XM_014776520.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:444   CCAUCGUCUCCACAACCCUCA   464

1.0 PREDICTED: Glycine max uncharacterized LOC106798933 (LOC106798933), mRNA uncharacterized LOC106798933(LOC106798933) coding protein psRNATarget
XM_014768198.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:397   CCAUCGUCUCCACAACCCUCA   417

1.0 PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X1, mRNA uncharacterized LOC106796321(LOC106796321) coding protein psRNATarget
XM_014768201.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:397   CCAUCGUCUCCACAACCCUCA   417

1.0 PREDICTED: Glycine max uncharacterized LOC106796321 (LOC106796321), transcript variant X2, mRNA uncharacterized LOC106796321(LOC106796321) coding protein psRNATarget
XM_006573938.2
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:417   CCAUCGUCUCCACAACCCUCA   437

1.0 PREDICTED: Glycine max uncharacterized LOC102667573 (LOC102667573), mRNA uncharacterized LOC102667573(LOC102667573) coding protein psRNATarget
XM_014779296.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  |||||=|||||||||||||||
targets:456   CCAUCGUCUCCACAACCCUCA   476

1.0 PREDICTED: Glycine max uncharacterized LOC106799792 (LOC106799792), mRNA uncharacterized LOC106799792(LOC106799792) coding protein psRNATarget
XM_014776847.1
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  ||||||||||||||||||*||
targets:806   CCAUCAUCUCCACAACCCCCA   826

1.5 PREDICTED: Glycine max uncharacterized LOC106798992 (LOC106798992), transcript variant X3, mRNA uncharacterized LOC106798992(LOC106798992) coding protein psRNATarget
XM_003534130.3
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  *||||||||=||||||||||*
targets:156   GCAUCAUCUUCACAACCCUCU   176

2.5 PREDICTED: Glycine max protein ASPARTIC PROTEASE IN GUARD CELL 1 (LOC100784849), mRNA protein ASPARTIC PROTEASE IN GUARD CELL 1(LOC100784849) coding protein psRNATarget
XM_003541118.3
ncRNA:21   GGUAGUAGAGGUGUUGGGAGU   1
  ||||||*|*||||||||||||
targets:195   CCAUCAACACCACAACCCUCA   215

2.5 PREDICTED: Glycine max protein CUP-SHAPED COTYLEDON 2-like (LOC100778689), mRNA protein CUP-SHAPED COTYLEDON 2-like(LOC100778689) coding protein psRNATarget
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