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BaseInfo

ncRNA ID	ath-miR3440b-5p
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:6217476-6217600 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	24 - UUUUCUUGGCCCAUCCACUUC - 44
Stem-loop(if miRNA)	U   --         U        G  UU       C               --        A  CUG  GUAUUUUGC CAAGUAUG UU  CUUGGCC AUCCACUUCUAAUGU  GUUUUGUA C  |||  ||||||||| |||||||| ||  ||||||| |||||||||||||||  |||||||| U  GAC  CGUAAAACG GUUCAUGC AA  GAACUGG UAGGUGAAGAUUACG  UAAAACGU A U   GG         U        G  GG       U               UG        A
Stem-loop sequence	UCUGGUAUUUUGCUCAAGUAUGGUUUUCUUGGCCCAUCCACUUCUAAUGUGUUUUGUAACUAAUGCAAAAUGUGCAUUAGAAGUGGAUUGGUCAAGGGAAGCGUACUUGUGCAAAAUGCGGCAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001125721.1	ncRNA:21   CUUCACCUACCCGGUUCUUUU   1   *||||**|||||||||||||| targets:2321   CAAGUAUAUGGGCCAAGAAAA   2341 Target Full Sequence	2.0	Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs) family protein mRNA	RNA-binding (RRM/RBD/RNP motifs) family protein(AT5G08695)	coding protein	psRNATarget

Reference

1	PMID:20407023 "Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus"; Ma Z, Coruh C, Axtell MJ; Plant Cell. 22:1090-1103(2010).
2	PMID:20621980 "siRNAs from miRNA sites mediate DNA methylation of target genes"; Chellappan P, Xia J, Zhou X, Gao S, Zhang X, Coutino G, Vazquez F, Zhang W, Jin H; Nucleic Acids Res. 38:6883-6894(2010).