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BaseInfo

ncRNA ID novel_gma_miR5953
Species Glycine max
Class miRNA
Genome position Chr2:1277618-1277699 [-]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 21
Mature sequence(if miRNA) 1 - CAUGAAAUAACAUAUAUGUAG - 21
Stem-loop(if miRNA) --      U           A  C       U  AU  AUU
  ACGUAU UGUUGUUUCAU UC UAUAUGU UG  AA   G
  |||||| ||||||||||| || ||||||| ||  ||
  UGUAUA ACAAUAAAGUA AG AUAUGUA AC  UU   C
GA      U           C  A       U  CU  CAU
Stem-loop sequence ACGUAUUUGUUGUUUCAUAUCCUAUAUGUUUGAUAAAUUGCUACUUUCCAUAUGUAUAAGACAUGAAAUAACAUAUAUGUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006588809.2
ncRNA:21   GAUGUAUAUACAAUAAAGUAC   1
  *||||*||||*||||||||||
targets:21   AUACACAUAUUUUAUUUCAUG   41

2.5 PREDICTED: Glycine max BEL1-like homeodomain protein 1 (LOC100791773), transcript variant X1, mRNA BEL1-like homeodomain protein 1(LOC100791773) coding protein psRNATarget
XM_003535767.3
ncRNA:21   GAUGUAUAUACAAUAAAGUAC   1
  *||||*||||*||||||||||
targets:21   AUACACAUAUUUUAUUUCAUG   41

2.5 PREDICTED: Glycine max BEL1-like homeodomain protein 1 (LOC100791773), transcript variant X3, mRNA BEL1-like homeodomain protein 1(LOC100791773) coding protein psRNATarget
XM_014763048.1
ncRNA:21   GAUGUAUAUACAAUAAAGUAC   1
  *||||*||||*||||||||||
targets:21   AUACACAUAUUUUAUUUCAUG   41

2.5 PREDICTED: Glycine max BEL1-like homeodomain protein 1 (LOC100791773), transcript variant X2, mRNA BEL1-like homeodomain protein 1(LOC100791773) coding protein psRNATarget