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BaseInfo

ncRNA ID novel_gma_miR5931
Species Glycine max
Class miRNA
Genome position Chr18:57920690-57920803 [-]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 24
Mature sequence(if miRNA) 1 - UAAGAUCAAGUAGUUAACAUCGGU - 24
Stem-loop(if miRNA) --U           G     G         -AUU    -A               UAU
   GAUGUUAACUA UUGAU UUAACAUCG    UUUA  AAAGUCGAUGUUAAC   A
   ||||||||||| ||||| |||||||||    ||||  |||||||||||||||
   CUACAAUUGAU AACUA AAUUGUAGC    AAAU  UUUUAGCUACAAUUG   U
UGG           G     G         CAAU    AG               UAU
Stem-loop sequence UGAUGUUAACUAGUUGAUGUUAACAUCGAUUUUUAAAAAGUCGAUGUUAACUAUAUUAUGUUAACAUCGAUUUUGAUAAAUAACCGAUGUUAAGAUCAAGUAGUUAACAUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT094157.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1046   AAGGAUGUGGACUACUUGAUCUUU   1069

3.0 Soybean clone JCVI-FLGm-24L19 unknown mRNA NA coding protein psRNATarget
XM_014769928.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1108   AAGGAUGUGGACUACUUGAUCUUU   1131

3.0 PREDICTED: Glycine max protein ESKIMO 1-like (LOC100785578), transcript variant X2, mRNA protein ESKIMO 1-like(LOC100785578) coding protein psRNATarget
XM_014769926.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1362   AAGGAUGUGGACUACUUGAUCUUU   1385

3.0 PREDICTED: Glycine max protein ESKIMO 1-like (LOC100785578), transcript variant X1, mRNA protein ESKIMO 1-like(LOC100785578) coding protein psRNATarget