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BaseInfo

ncRNA ID novel_gma_miR5917
Species Glycine max
Class miRNA
Genome position Chr16:714250-714394 [+]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 23
Mature sequence(if miRNA) 123 - UUUGAGAACUUGAUGGUAAAAAU - 145
Stem-loop(if miRNA) --         A                ---CAA     ACAUA       --CAACU     CAGC    UU AA
  UUUUACCAU AAGUUCUCAAAUUAAA      CAUGU     GUUUUUU       UUAAA    UCCG  A  A
  ||||||||| ||||||||||||||||      |||||     |||||||       |||||    ||||  |
  AAAAUGGUA UUCAAGAGUUUAAUUU      GUGCA     CAAAAAA       AGUUU    AGGU  U  A
UA         G                AUAACG     CUAAA       UAAAAAU     --UA    GG GU
Stem-loop sequence UUUUACCAUAAAGUUCUCAAAUUAAACAACAUGUACAUAGUUUUUUCAACUUUAAACAGCUCCGUUAAAAAUGUGGUGGAAUUUUGAUAAAAAUAAAAAACAAAUCACGUGGCAAUAUUUAAUUUGAGAACUUGAUGGUAAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT095694.1
ncRNA:23   UAAAAAUGGUAGUUCAAGAGUUU   1
  |||||||||||*|||||||||||
targets:1522   AUUUUUACCAUAAAGUUCUCAAA   1544

1.5 Soybean clone JCVI-FLGm-25E6 unknown mRNA NA coding protein psRNATarget
XM_003547705.2
ncRNA:23   UAAAAAUGGUAGUUCAAGAGUUU   1
  |||||||||||*|||||||||||
targets:1596   AUUUUUACCAUAAAGUUCUCAAA   1618

1.5 PREDICTED: Glycine max putative receptor-like protein kinase At1g72540 (LOC100788896), mRNA putative receptor-like protein kinase At1g72540(LOC100788896) coding protein psRNATarget
XM_006591088.2
ncRNA:23   UAAAAAUGGUAGUUCAAGAGUUU   1
  ||||||=|||||||*||||||||
targets:1851   AUUUUUGCCAUCAAAUUCUCAAA   1873

2.5 PREDICTED: Glycine max bifunctional endo-1,4-beta-xylanase XylA-like (LOC102664732), mRNA bifunctional endo-1,4-beta-xylanase XylA-like(LOC102664732) coding protein psRNATarget