ncRNA ID | novel_gma_miR5917 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr16:714250-714394 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR835767 |
Length | 23 |
Mature sequence(if miRNA) | 123 - UUUGAGAACUUGAUGGUAAAAAU - 145 |
Stem-loop(if miRNA) |
--         A                ---CAA     ACAUA       --CAACU     CAGC    UU AA   UUUUACCAU AAGUUCUCAAAUUAAA      CAUGU     GUUUUUU       UUAAA    UCCG  A  A   ||||||||| ||||||||||||||||      |||||     |||||||       |||||    ||||  |   AAAAUGGUA UUCAAGAGUUUAAUUU      GUGCA     CAAAAAA       AGUUU    AGGU  U  A UA         G                AUAACG     CUAAA       UAAAAAU     --UA    GG GU |
Stem-loop sequence | UUUUACCAUAAAGUUCUCAAAUUAAACAACAUGUACAUAGUUUUUUCAACUUUAAACAGCUCCGUUAAAAAUGUGGUGGAAUUUUGAUAAAAAUAAAAAACAAAUCACGUGGCAAUAUUUAAUUUGAGAACUUGAUGGUAAAAAU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT095694.1 |
|
1.5 | Soybean clone JCVI-FLGm-25E6 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
XM_003547705.2 |
|
1.5 | PREDICTED: Glycine max putative receptor-like protein kinase At1g72540 (LOC100788896), mRNA | putative receptor-like protein kinase At1g72540(LOC100788896) | coding protein | psRNATarget | |||||||||
XM_006591088.2 |
|
2.5 | PREDICTED: Glycine max bifunctional endo-1,4-beta-xylanase XylA-like (LOC102664732), mRNA | bifunctional endo-1,4-beta-xylanase XylA-like(LOC102664732) | coding protein | psRNATarget |