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BaseInfo

ncRNA ID novel_gma_miR5912
Species Glycine max
Class miRNA
Genome position Chr15:42155264-42155334 [+]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 24
Mature sequence(if miRNA) 48 - UAAGAUCAAGUAGUUAACAUCGGU - 71
Stem-loop(if miRNA) --U           G     G       C     U
   GAUGUUAACUA UUGAU UUAACAU GAUUU G
   ||||||||||| ||||| ||||||| ||||| U
   CUACAAUUGAU AACUA AAUUGUA CUAAA C
UGG           G     G       A     A
Stem-loop sequence UGAUGUUAACUAGUUGAUGUUAACAUCGAUUUUGUCAAAAUCAAUGUUAAGAUCAAGUAGUUAACAUCGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT094157.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1046   AAGGAUGUGGACUACUUGAUCUUU   1069

3.0 Soybean clone JCVI-FLGm-24L19 unknown mRNA NA coding protein psRNATarget
XM_014769928.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1108   AAGGAUGUGGACUACUUGAUCUUU   1131

3.0 PREDICTED: Glycine max protein ESKIMO 1-like (LOC100785578), transcript variant X2, mRNA protein ESKIMO 1-like(LOC100785578) coding protein psRNATarget
XM_014769926.1
ncRNA:24   UGGCUACAAUUGAUGAACUAGAAU   1
  |**|||||*=|||||||||||||*
targets:1362   AAGGAUGUGGACUACUUGAUCUUU   1385

3.0 PREDICTED: Glycine max protein ESKIMO 1-like (LOC100785578), transcript variant X1, mRNA protein ESKIMO 1-like(LOC100785578) coding protein psRNATarget