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BaseInfo

ncRNA ID novel_gma_miR5905
Species Glycine max
Class miRNA
Genome position Chr1:32510423-32510523 [+]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 22
Mature sequence(if miRNA) 80 - CUUGAGACAUACCUUUUAACUA - 101
Stem-loop(if miRNA) --UGC     U     AA     --    -GGG A               AUA
     AGAAG UGUGU  CUCGA  GUUU    C CUGGUAAUCGAUUAC   C
     ||||| |||||  |||||  ||||    | |||||||||||||||
     UUUUC AUACA  GAGUU  CAAA    G GACCAUUAGCUAAUG   U
AUCAA     C     --     CC    AGAA A               GUU
Stem-loop sequence UGCAGAAGUUGUGUAACUCGAGUUUGGGCACUGGUAAUCGAUUACAUACUUUGGUAAUCGAUUACCAGAGAAGAAAACCCUUGAGACAUACCUUUUAACUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583102.2
ncRNA:22   AUCAAUUUUCCAUACAGAGUUC   1
  |*||*|||||*|||||||||||
targets:1585   UUGUGAAAAGCUAUGUCUCAAG   1606

2.5 PREDICTED: Glycine max uncharacterized LOC100807956 (LOC100807956), transcript variant X2, mRNA uncharacterized LOC100807956(LOC100807956) coding protein psRNATarget
XM_003528528.3
ncRNA:22   AUCAAUUUUCCAUACAGAGUUC   1
  |*||*|||||*|||||||||||
targets:1584   UUGUGAAAAGCUAUGUCUCAAG   1605

2.5 PREDICTED: Glycine max uncharacterized LOC100807956 (LOC100807956), transcript variant X1, mRNA uncharacterized LOC100807956(LOC100807956) coding protein psRNATarget