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BaseInfo

ncRNA ID	novel_gma_miR5904
Species	Glycine max
Class	miRNA
Genome position	Chr14:33435034-33435102 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835767
Length	21
Mature sequence(if miRNA)	49 - UGAAACUUCAAUUCUGAUUGG - 69
Stem-loop(if miRNA)	--     A              CU   --   U  A   GAUCA AAUUGGAGUUUCAU  CGU  CAA CA A   ||||| ||||||||||||||  |||  ||| ||   UUAGU UUAACUUCAAAGUG  GUA  GUU GU A GG     C              -U   UC   U  U
Stem-loop sequence	GAUCAAAAUUGGAGUUUCAUCUCGUCAAUCAAAAUUGUUUGCUAUGUGUGAAACUUCAAUUCUGAUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006590583.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||||||||||||| targets:1151   UCAAUCAGAAUUGAAGUUUCA   1171 Target Full Sequence	0.0	PREDICTED: Glycine max cyclin-D3-3-like (LOC100807175), transcript variant X2, mRNA	cyclin-D3-3-like(LOC100807175)	coding protein	psRNATarget
XM_003538758.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||||||||||||| targets:1184   UCAAUCAGAAUUGAAGUUUCA   1204 Target Full Sequence	0.0	PREDICTED: Glycine max cyclin-D3-3-like (LOC100807175), transcript variant X1, mRNA	cyclin-D3-3-like(LOC100807175)	coding protein	psRNATarget
XM_003516562.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||||||||||||| targets:1259   UCAAUCAGAAUUGAAGUUUCA   1279 Target Full Sequence	0.0	PREDICTED: Glycine max cyclin-D3-2-like (LOC100802683), mRNA	cyclin-D3-2-like(LOC100802683)	coding protein	psRNATarget
AK285528.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   |=|||||*||||||||||||| targets:1930   CUAAUCAAAAUUGAAGUUUCA   1950 Target Full Sequence	1.0	Glycine max cDNA, clone: GMFL01-10-P20	NA	coding protein	psRNATarget
XM_003524477.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   |=|||||*||||||||||||| targets:1940   CUAAUCAAAAUUGAAGUUUCA   1960 Target Full Sequence	1.0	PREDICTED: Glycine max 3-ketoacyl-CoA synthase 11-like (LOC100817884), mRNA	3-ketoacyl-CoA synthase 11-like(LOC100817884)	coding protein	psRNATarget
XM_006588203.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   |||||||||||||||||||=| targets:255   CCAAUCAGAAUUGAAGUUUUA   275 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized sugar kinase slr0537-like (LOC100792076), mRNA	uncharacterized sugar kinase slr0537-like(LOC100792076)	coding protein	psRNATarget
XM_003544750.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||||*|||||||| targets:840   UCAAUCAGAAUUCAAGUUUCA   860 Target Full Sequence	1.5	PREDICTED: Glycine max protein TRANSPARENT TESTA 1 (LOC547675), mRNA	protein TRANSPARENT TESTA 1(LOC547675)	coding protein	psRNATarget
AJ311808.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||||*|||||||| targets:799   UCAAUCAGAAUUCAAGUUUCA   819 Target Full Sequence	1.5	Glycine max partial mRNA for WIP1 protein (WIP1 gene)	NA	coding protein	psRNATarget
XM_003542527.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|||||||||*|||||||||| targets:1632   UCAAUCAGAAGUGAAGUUUCA   1652 Target Full Sequence	1.5	PREDICTED: Glycine max protein CHUP1, chloroplastic-like (LOC100776941), mRNA	protein CHUP1, chloroplastic-like(LOC100776941)	coding protein	psRNATarget
XM_003526422.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   ||=|||||||||||||||||= targets:584   CCGAUCAGAAUUGAAGUUUCG   604 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100782996 (LOC100782996), mRNA	uncharacterized LOC100782996(LOC100782996)	coding protein	psRNATarget
BT095961.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   ||=|||||||||||||||||* targets:553   CCGAUCAGAAUUGAAGUUUCC   573 Target Full Sequence	2.0	Soybean clone JCVI-FLGm-15G2 unknown mRNA	NA	coding protein	psRNATarget
XM_003522635.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   ||=|||||||||||||||||* targets:640   CCGAUCAGAAUUGAAGUUUCC   660 Target Full Sequence	2.0	PREDICTED: Glycine max uncharacterized LOC100798503 (LOC100798503), mRNA	uncharacterized LOC100798503(LOC100798503)	coding protein	psRNATarget
XM_014764271.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||||=||||||||||||||* targets:356   UCAAUUAGAAUUGAAGUUUCU   376 Target Full Sequence	2.0	PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At1g67720 (LOC100798488), transcript variant X2, mRNA	probable LRR receptor-like serine/threonine-protein kinase At1g67720(LOC100798488)	coding protein	psRNATarget
AK243773.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||*|=||||||||||||||| targets:826   UCAUUUAGAAUUGAAGUUUCA   846 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-01-D14	NA	coding protein	psRNATarget
AK245707.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||||=|*||||||||||||| targets:938   UCAAUUAAAAUUGAAGUUUCA   958 Target Full Sequence	2.0	Glycine max cDNA, clone: GMFL01-38-N13	NA	coding protein	psRNATarget
XM_006585459.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|=||||||||||=||||||| targets:182   UCGAUCAGAAUUGGAGUUUCA   202 Target Full Sequence	2.5	PREDICTED: Glycine max phospholipase D alpha 4-like (LOC100812642), transcript variant X3, mRNA	phospholipase D alpha 4-like(LOC100812642)	coding protein	psRNATarget
XM_006576592.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   *||||=||||||||=|||||| targets:2480   ACAAUUAGAAUUGAGGUUUCA   2500 Target Full Sequence	2.5	PREDICTED: Glycine max linoleate 9S-lipoxygenase 5, chloroplastic-like (LOC100797946), transcript variant X2, mRNA	linoleate 9S-lipoxygenase 5, chloroplastic-like(LOC100797946)	coding protein	psRNATarget
XM_006576591.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   *||||=||||||||=|||||| targets:2820   ACAAUUAGAAUUGAGGUUUCA   2840 Target Full Sequence	2.5	PREDICTED: Glycine max linoleate 9S-lipoxygenase 5, chloroplastic-like (LOC100797946), transcript variant X1, mRNA	linoleate 9S-lipoxygenase 5, chloroplastic-like(LOC100797946)	coding protein	psRNATarget
XM_006594310.2	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   ||=||||||||||*||||||| targets:217   CCGAUCAGAAUUGCAGUUUCA   237 Target Full Sequence	2.5	PREDICTED: Glycine max protein argonaute 6 (LOC100778875), transcript variant X5, mRNA	protein argonaute 6(LOC100778875)	coding protein	psRNATarget
XM_003544018.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =|*||||||||||=||||||| targets:1172   UCUAUCAGAAUUGGAGUUUCA   1192 Target Full Sequence	2.5	PREDICTED: Glycine max LOB domain-containing protein 21-like (LOC100777635), mRNA	LOB domain-containing protein 21-like(LOC100777635)	coding protein	psRNATarget
XM_003554918.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||||||*|||||=||||||| targets:1544   UCAAUCAAAAUUGGAGUUUCA   1564 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100811822 (LOC100811822), mRNA	uncharacterized LOC100811822(LOC100811822)	coding protein	psRNATarget
XM_014770913.1	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||||||*|||||=||||||| targets:1529   UCAAUCAUAAUUGGAGUUUCA   1549 Target Full Sequence	2.5	PREDICTED: Glycine max mitochondrial import inner membrane translocase subunit TIM22-3-like (LOC100812694), mRNA	mitochondrial import inner membrane translocase subunit TIM22-3-like(LOC100812694)	coding protein	psRNATarget
XM_003517602.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   =||||||*|||||=||||||| targets:3098   UCAAUCAAAAUUGGAGUUUCA   3118 Target Full Sequence	2.5	PREDICTED: Glycine max disease resistance protein RPM1-like (LOC100805346), mRNA	disease resistance protein RPM1-like(LOC100805346)	coding protein	psRNATarget
XM_003554526.3	ncRNA:21   GGUUAGUCUUAACUUCAAAGU   1   |=**||=|||||||||||||| targets:87   CUUUUCGGAAUUGAAGUUUCA   107 Target Full Sequence	3.0	PREDICTED: Glycine max protein FAM192A-like (LOC100780978), mRNA	protein FAM192A-like(LOC100780978)	coding protein	psRNATarget