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BaseInfo

ncRNA ID novel_gma_miR5888
Species Glycine max
Class miRNA
Genome position Chr11:25818972-25819101 [-]
Reference genome Glycine_max_v2.0
Source SRR835767
Length 22
Mature sequence(if miRNA) 109 - AAAACCGAUGUCGUUAAACACU - 130
Stem-loop(if miRNA) --           C     A                 UUCAAAU  C         --CA  UUGA
  AAAACCGAUGU GUUAA CACUUACAACAUCGGUU       AA CGAUGUUAA    GC    U
  ||||||||||| ||||| |||||||||||||||||       || |||||||||    ||
  UUUUGGCUACA CAAUU GUGAAUGUUGUAGCCGA       UU GCUACAAUU    CG    U
AC           A     C                 UAAAAUU  A         UUAG  UGAU
Stem-loop sequence AAAACCGAUGUCGUUAAACACUUACAACAUCGGUUUUCAAAUAACCGAUGUUAACAGCUUGAUUUAGUGCGAUUUUAACAUCGAUUUUAAAAUAGCCGAUGUUGUAAGUGCUUAACAACAUCGGUUUUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006601416.2
ncRNA:22   UCACAAAUUGCUGUAGCCAAAA   1
  ***|||||*|*|||||||||||
targets:417   UAAGUUUAUCAACAUCGGUUUU   438

2.5 PREDICTED: Glycine max uncharacterized LOC102666752 (LOC102666752), transcript variant X1, mRNA uncharacterized LOC102666752(LOC102666752) coding protein psRNATarget