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BaseInfo

ncRNA ID novel_gma_miR5852
Species Glycine max
Class miRNA
Genome position Chr6:1416033-1416107 [-]
Reference genome Glycine_max_v2.0
Source SRR835766
Length 24
Mature sequence(if miRNA) 52 - UUUUAUUGGGAAAGAAAGUAUUUA - 75
Stem-loop(if miRNA) --U             A              CUUUUG
   UUUAUUGGGAAAG AAGUAUUUAUUGCA      C
   ||||||||||||| ||||||||||||||      A
   AAAUAACUCUUUU UUCAUAAAUAAUGU      U
CAU             G              AUUUUU
Stem-loop sequence UUUUAUUGGGAAAGAAAGUAUUUAUUGCACUUUUGCAUUUUUUAUGUAAUAAAUACUUGUUUUCUCAAUAAAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006578392.2
ncRNA:24   AUUUAUGAAAGAAAGGGUUAUUUU   1
  ||=*|||||*|||||||||*||||
targets:11   UAGCUACUUGCUUUCCCAACAAAA   34

2.5 PREDICTED: Glycine max protein DENND6A-like (LOC100782429), transcript variant X3, mRNA protein DENND6A-like(LOC100782429) coding protein psRNATarget
XM_003523969.3
ncRNA:24   AUUUAUGAAAGAAAGGGUUAUUUU   1
  ||=*|||||*|||||||||*||||
targets:11   UAGCUACUUGCUUUCCCAACAAAA   34

2.5 PREDICTED: Glycine max protein DENND6A-like (LOC100782429), transcript variant X1, mRNA protein DENND6A-like(LOC100782429) coding protein psRNATarget