Search result

BaseInfo

ncRNA ID novel_gma_miR5832
Species Glycine max
Class miRNA
Genome position Chr20:46912459-46912552 [+]
Reference genome Glycine_max_v2.0
Source SRR835766;SRR835770
Length 21
Mature sequence(if miRNA) 1 - UGGAGAAGGGGAGCACGUGCA - 21
Stem-loop(if miRNA) --        G  A          AA    AUAAA    AG -    AU
  UGGAGAAG GG GCACGUGCAA  UCAG     CUAG  C AGCU  A
  |||||||| || ||||||||||  ||||     ||||  | ||||  A
  ACCUCUUC UC CGUGCACGUU  AGUC     GAUC  G UCGA  U
CA        G  C          -G    ---AA    AA A    GA
Stem-loop sequence UGGAGAAGGGGAGCACGUGCAAAAUCAGAUAAACUAGAGCAGCUAUAAUAGAGCUAGAACUAGAACUGAGUUGCACGUGCCCUGCUUCUCCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003535646.3
ncRNA:21   ACGUGCACGAGGGGAAGAGGU   1
  |*|||||*|||*|||||||||
targets:685   UCCACGUUCUCACCUUCUCCA   705

2.5 PREDICTED: Glycine max putative pentatricopeptide repeat-containing protein At3g08820 (LOC100807506), mRNA putative pentatricopeptide repeat-containing protein At3g08820(LOC100807506) coding protein psRNATarget