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BaseInfo

ncRNA ID	novel_gma_miR5827
Species	Glycine max
Class	miRNA
Genome position	Chr11:27274776-27274954 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835766
Length	24
Mature sequence(if miRNA)	1 - UGCACUAGAAGAAUCAGCACCAAU - 24
Stem-loop(if miRNA)	--          GA             CG   C        C       G             G     C    GC         C      UGCACUAGAA  AUCAGCACCAAUU  UGC UCUUCCUC UCUACUA CUCAAUAUCUUUC UUUCA CUUU  UUUUGUAAA UACA   ||||||||||  |||||||||||||  ||| |||||||| ||||||| ||||||||||||| ||||| ||||  ||||||||| |||C   ACGUGAUCUU  UAGUCGUGGUUAG  ACG AGAAGGAG AGAUGAU GAGUUAUAGAAAG AAAGU GAAA  AAAACAUUU AUGU CA          GC             AU   A        C       A             G     U    AC         A
Stem-loop sequence	UGCACUAGAAGAAUCAGCACCAAUUCGUGCCUCUUCCUCCUCUACUAGCUCAAUAUCUUUCGUUUCACCUUUGCUUUUGUAAACUACACUGUAAUUUACAAAACAAAAGUUGAAAGGAAAGAUAUUGAGAUAGUAGACGAGGAAGAAGCAUAGAUUGGUGCUGAUCGUUCUAGUGCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006586135.2	ncRNA:24   UAACCACGACUAAGAAGAUCACGU   1   |||||||||||||*|||||||||| targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855 Target Full Sequence	1.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_014779469.1	ncRNA:24   UAACCACGACUAAGAAGAUCACGU   1   |||||||||||||*|||||||||| targets:832   AUUGGUGCUGAUUGUUCUAGUGCA   855 Target Full Sequence	1.5	PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA	SNF2 domain-containing protein CLASSY 3-like(LOC100806733)	coding protein	psRNATarget
XM_006591670.1	ncRNA:24   UAACCACGACUAAGAAGAUCACGU   1   |||||||||*|||*|||||||||| targets:88   AUUGGUGCUAAUUGUUCUAGUGCA   111 Target Full Sequence	2.5	PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA	glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828)	coding protein	psRNATarget
XM_006585842.2	ncRNA:24   UAACCACGACUAAGAAGAUCACGU   1   ||**|||=|||||||||||*|||| targets:978   AUCAGUGUUGAUUCUUCUAAUGCA   1001 Target Full Sequence	2.5	PREDICTED: Glycine max rhamnogalacturonate lyase-like (LOC100791732), mRNA	rhamnogalacturonate lyase-like(LOC100791732)	coding protein	psRNATarget