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BaseInfo

ncRNA ID novel_gma_miR5824
Species Glycine max
Class miRNA
Genome position Chr19:8868807-8868894 [+]
Reference genome Glycine_max_v2.0
Source SRR835766;SRR835770
Length 22
Mature sequence(if miRNA) 1 - AUUGACAGAAGAUAGAGAGCAC - 22
Stem-loop(if miRNA) --A                      AAAC  C   C  A     G
   UUGACAGAAGAUAGAGAGCACA    UG UCA AC CAAAA C
   ||||||||||||||||||||||    || ||| || |||||
   AACUGUCUUCUAUCUCUCGUGU    AC AGU UG GUUUU U
AAC                      --CC  U   A  G     U
Stem-loop sequence AUUGACAGAAGAUAGAGAGCACAAAACUGCUCACACACAAAAGCUUUUUUGGGUAUGAUCACCUGUGCUCUCUAUCUUCUGUCAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006598954.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||||||||||||||*
targets:1011   GUGCUCUCUAUCUUCUGUCAAC   1032

1.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X3, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_003549082.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||||||||||||||*
targets:1069   GUGCUCUCUAUCUUCUGUCAAC   1090

1.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X2, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_006598953.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||||||||||||||*
targets:1176   GUGCUCUCUAUCUUCUGUCAAC   1197

1.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100792071), transcript variant X1, mRNA teosinte glume architecture 1-like(LOC100792071) coding protein psRNATarget
XM_003553896.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||||||||||||||*
targets:1500   GUGCUCUCUAUCUUCUGUCAAC   1521

1.0 PREDICTED: Glycine max teosinte glume architecture 1-like (LOC100798317), mRNA teosinte glume architecture 1-like(LOC100798317) coding protein psRNATarget
BT092024.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  *||||||||||||||||||||*
targets:593   AUGCUCUCUAUCUUCUGUCAAG   614

1.0 Soybean clone JCVI-FLGm-9K12 unknown mRNA NA coding protein psRNATarget
NM_001249380.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  *||||||||||||||||||||*
targets:593   AUGCUCUCUAUCUUCUGUCAAG   614

1.0 Glycine max uncharacterized LOC100527199 (LOC100527199), mRNA uncharacterized LOC100527199(LOC100527199) coding protein psRNATarget
XM_006575162.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:647   GUGCUCUCUCUCUUCUGUCAAG   668

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X2, mRNA squamosa promoter-binding-like protein 17(LOC100819941) coding protein psRNATarget
XM_003551373.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:855   GUGCUCUCUCUCUUCUGUCAAG   876

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100789301), mRNA squamosa promoter-binding-like protein 9(LOC100789301) coding protein psRNATarget
XM_003518032.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:933   GUGCUCUCUCUCUUCUGUCAAG   954

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 17 (LOC100819941), transcript variant X1, mRNA squamosa promoter-binding-like protein 17(LOC100819941) coding protein psRNATarget
XM_006590252.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1187   GUGCUCUCUCUCUUCUGUCAAC   1208

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X4, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006590253.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1254   GUGCUCUCUCUCUUCUGUCAAC   1275

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X3, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
NM_001255388.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1272   GUGCUCUCUCUCUUCUGUCAAC   1293

2.5 Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
BT093985.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1273   GUGCUCUCUCUCUUCUGUCAAC   1294

2.5 Soybean clone JCVI-FLGm-24F23 unknown mRNA NA coding protein psRNATarget
XM_003553380.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1154   GUGCUCUCUCUCUUCUGUCAAA   1175

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100807165), mRNA squamosa promoter-binding-like protein 9(LOC100807165) coding protein psRNATarget
XM_006590250.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1346   GUGCUCUCUCUCUUCUGUCAAC   1367

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X2, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_003520486.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1210   GUGCUCUCUCUCUUCUGUCAAA   1231

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X2, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
XM_006590256.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1378   GUGCUCUCUCUCUUCUGUCAAC   1399

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X5, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006576789.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1256   GUGCUCUCUCUCUUCUGUCAAA   1277

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X1, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
XM_006601826.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1317   GUGCUCUCUCUCUUCUGUCAAC   1338

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X3, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601825.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1349   GUGCUCUCUCUCUUCUGUCAAC   1370

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X2, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601827.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1387   GUGCUCUCUCUCUUCUGUCAAC   1408

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X1, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_014771012.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1416   GUGCUCUCUCUCUUCUGUCAAC   1437

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X4, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006590249.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1598   GUGCUCUCUCUCUUCUGUCAAC   1619

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12-like (LOC100796013), transcript variant X1, mRNA squamosa promoter-binding-like protein 12-like(LOC100796013) coding protein psRNATarget
XM_006601830.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1561   GUGCUCUCUCUCUUCUGUCAAC   1582

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X5, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_006601829.2
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:1968   GUGCUCUCUCUCUUCUGUCAAC   1989

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 12 (LOC100781289), transcript variant X6, mRNA squamosa promoter-binding-like protein 12(LOC100781289) coding protein psRNATarget
XM_014773774.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  |||||||||*|||||||||||*
targets:2276   GUGCUCUCUCUCUUCUGUCAAA   2297

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 9 (LOC100780949), transcript variant X3, mRNA squamosa promoter-binding-like protein 9(LOC100780949) coding protein psRNATarget
LQ242597.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  ||||||*||*||||||||||||
targets:70   GUGCUCACUCUCUUCUGUCAAU   91

2.5 Sequence 8592 from Patent EP2985353 NA coding protein psRNATarget
HI410467.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  ||||||*||*||||||||||||
targets:70   GUGCUCACUCUCUUCUGUCAAU   91

2.5 Sequence 8592 from Patent EP2074227 NA coding protein psRNATarget
JB170928.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  ||||||*||*||||||||||||
targets:70   GUGCUCACUCUCUUCUGUCAAU   91

2.5 Sequence 8592 from Patent EP2559767 NA coding protein psRNATarget
XM_003540425.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  *|||||*||*||||||||||||
targets:811   AUGCUCCCUCUCUUCUGUCAAU   832

2.5 PREDICTED: Glycine max squamosa promoter-binding-like protein 3 (LOC100305703), mRNA squamosa promoter-binding-like protein 3(LOC100305703) coding protein psRNATarget
BT098928.1
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  *|||||*||*||||||||||||
targets:894   AUGCUCCCUUUCUUCUGUCAAU   915

2.5 Soybean clone JCVI-FLGm-16D18 unknown mRNA NA coding protein psRNATarget
XM_003543185.3
ncRNA:22   CACGAGAGAUAGAAGACAGUUA   1
  *|||||*||*||||||||||||
targets:1364   AUGCUCCCUCUCUUCUGUCAAU   1385

2.5 PREDICTED: Glycine max squamosa promoter-binding protein 1-like (LOC100815775), mRNA squamosa promoter-binding protein 1-like(LOC100815775) coding protein psRNATarget
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