Search result

BaseInfo

ncRNA ID	novel_gma_miR5821
Species	Glycine max
Class	miRNA
Genome position	Chr18:4345551-4345652 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835766
Length	24
Mature sequence(if miRNA)	79 - AUGAUGAUUUGUGAUUGGAUGACA - 102
Stem-loop(if miRNA)	--   A       G       G   -GAU      ---A        AA  AA   UCA UCAAUCA AAAUCAU GUA    AUAAGU    UGACUUUU  GA  A   ||| ||||||| ||||||| |||    ||||||    ||||||||  ||   AGU GGUUAGU UUUAGUA UAU    UAUUCA    ACUGAAAA  UU  U AC   A       G       G   AUAC      AACA        CG  AU
Stem-loop sequence	UCAAUCAAUCAGAAAUCAUGGUAGAUAUAAGUAUGACUUUUAAGAAAAUUAUUGCAAAAGUCAACAAACUUAUCAUAUAUGAUGAUUUGUGAUUGGAUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006589248.2	ncRNA:24   ACAGUAGGUUAGUGUUUAGUAGUA   1   ||*=||||||||||||||||*||* targets:938   UGCUAUCCAAUCACAAAUCAGCAA   961 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802721 (LOC100802721), mRNA	uncharacterized LOC100802721(LOC100802721)	coding protein	psRNATarget
XM_003555453.3	ncRNA:24   ACAGUAGGUUAGUGUUUAGUAGUA   1   ||*=||||||||||||||||*||* targets:896   UGCUAUCCAAUCACAAAUCAGCAA   919 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100814338 (LOC100814338), transcript variant X3, mRNA	uncharacterized LOC100814338(LOC100814338)	coding protein	psRNATarget
XM_006606287.2	ncRNA:24   ACAGUAGGUUAGUGUUUAGUAGUA   1   ||*=||||||||||||||||*||* targets:903   UGCUAUCCAAUCACAAAUCAGCAA   926 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100814338 (LOC100814338), transcript variant X2, mRNA	uncharacterized LOC100814338(LOC100814338)	coding protein	psRNATarget
XM_006606286.2	ncRNA:24   ACAGUAGGUUAGUGUUUAGUAGUA   1   ||*=||||||||||||||||*||* targets:926   UGCUAUCCAAUCACAAAUCAGCAA   949 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100814338 (LOC100814338), transcript variant X1, mRNA	uncharacterized LOC100814338(LOC100814338)	coding protein	psRNATarget