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BaseInfo

ncRNA ID novel_gma_miR5818
Species Glycine max
Class miRNA
Genome position Chr17:11481521-11481632 [+]
Reference genome Glycine_max_v2.0
Source SRR835766
Length 24
Mature sequence(if miRNA) 89 - AAAAAAACUCAUACAGAUCGUCAA - 112
Stem-loop(if miRNA) --A  A                        UUU   AUUUUUUAAAAUAAAUUAGA
   AC AUUUGUAUGAGUUUUUUUUAAUUU   AUU                    A
   || ||||||||||||||||||||||||   |||
   UG UAGACAUACUCAAAAAAAAUUGAG   CUA                    A
AAC  C                        UAC   AUAACUAGACAUACUUAAUA
Stem-loop sequence AACAAUUUGUAUGAGUUUUUUUUAAUUUUUUAUUAUUUUUUAAAAUAAAUUAGAAAAUAAUUCAUACAGAUCAAUAAUCCAUGAGUUAAAAAAAACUCAUACAGAUCGUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003527670.3
ncRNA:24   AACUGCUAGACAUACUCAAAAAAA   1
  *|||-||*|||||||*||||||||
targets:275   CUGA-GAACUGUAUGUGUUUUUUU   297

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At2g04860 (LOC100787089), mRNA pentatricopeptide repeat-containing protein At2g04860(LOC100787089) coding protein psRNATarget
XM_014770435.1
ncRNA:24   AACU--GCUAG-ACAUACUCAAAAAAA   1
  *|||--=||||-||||||||||||||*
targets:908   GUGAAUUGAUCGUGUAUGAGUUUUUUA   934

3.0 PREDICTED: Glycine max cation/H(+) antiporter 15-like (LOC100781310), mRNA cation/H(+) antiporter 15-like(LOC100781310) coding protein psRNATarget