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BaseInfo

ncRNA ID	novel_gma_miR5817
Species	Glycine max
Class	miRNA
Genome position	Chr1:55826770-55826943 [+]
Reference genome	Glycine_max_v2.0
Source	SRR835766
Length	24
Mature sequence(if miRNA)	151 - ACGUGACACGUGACCGUCAACAUU - 174
Stem-loop(if miRNA)	--UA               A     C  A    A        A       --               ---   U   ----------A     G     UUGACGGUCACGUGU ACGUU UU UUGG UGAUGAUU UCAUGUG  UCAUGUUUUGAUUGA   AUG CGA           UUCAU G     ||||||||||||||| ||||| || |||| |||||||| |||||||  |||||||||||||||   ||| |||           ||||| A     AACUGCCAGUGCACA UGCAA AA AACC ACUAUUGA AGUGCAC  AGUACAAGACUAACU   UAC GUU           AAGUA A UUAC               G     A  A    C        C       AU               GAU   U   GUUGUUAUGUA     G
Stem-loop sequence	UAUUGACGGUCACGUGUAACGUUCUUAUUGGAUGAUGAUUAUCAUGUGUCAUGUUUUGAUUGAAUGUCGAAUUCAUGGAAGAUGAAAUGUAUUGUUGUUGUCAUUAGUCAAUCAGAACAUGAUACACGUGACAGUUAUCACCCAAAAAAAACGUGACACGUGACCGUCAACAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003529834.3	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   *||*|||||||||||||||||||| targets:2000   UAUCUUGACGGUCACGUGUCACGU   2023 Target Full Sequence	0.0	PREDICTED: Glycine max laccase-6-like (LOC100789406), transcript variant X2, mRNA	laccase-6-like(LOC100789406)	coding protein	psRNATarget
XM_014777738.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   *||*|||||||||||||||||||| targets:2145   UAUCUUGACGGUCACGUGUCACGU   2168 Target Full Sequence	0.0	PREDICTED: Glycine max laccase-6-like (LOC100789406), transcript variant X1, mRNA	laccase-6-like(LOC100789406)	coding protein	psRNATarget
XM_006602607.2	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =||||||||*|||||||||||||| targets:527   GAUGUUGACUGUCACGUGUCACGU   550 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
XM_003518407.3	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   |||*|||||*|||||||||||||| targets:1628   AAUUUUGACUGUCACGUGUCACGU   1651 Target Full Sequence	1.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA	UPF0481 protein At3g47200-like(LOC100803577)	coding protein	psRNATarget
XM_014762964.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   ||||||||=*|||||||||||||| targets:162   AAUGUUGAUUGUCACGUGUCACGU   185 Target Full Sequence	2.0	PREDICTED: Glycine max fasciclin-like arabinogalactan protein 1 (LOC106794953), mRNA	fasciclin-like arabinogalactan protein 1(LOC106794953)	coding protein	psRNATarget
JB170905.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	2.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
HI410444.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	2.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242574.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:9   GAUGAUGACUGUCACGUGUCAUGU   32 Target Full Sequence	2.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:24   UUACAACUGCCAGUGCACAGUGCA   1   =|||*||||*|||||||||||=|| targets:70   GAUGAUGACUGUCACGUGUCAUGU   93 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget