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BaseInfo

ncRNA ID novel_gma_miR5815
Species Glycine max
Class miRNA
Genome position Chr17:36361104-36361204 [-]
Reference genome Glycine_max_v2.0
Source SRR835766;SRR835770
Length 21
Mature sequence(if miRNA) 1 - UGAAUGGUGAGGAUGAAGAGU - 21
Stem-loop(if miRNA) --   C               U   C           ----C   -    AUU
  UCU CAUCCUUACCAUUCA UUU UUGAAAUCUAA     GUA UAAG   A
  ||| ||||||||||||||| ||| |||||||||||     ||| ||||
  AGA GUAGGAGUGGUAAGU AAA AAUUUUAGAUU     CAU AUUC   G
UG   A               U   A           ACCAA   U    AGU
Stem-loop sequence UCUCCAUCCUUACCAUUCAUUUUCUUGAAAUCUAACGUAUAAGAUUAGUGACUUAUUACAACCAUUAGAUUUUAAAAAAUUGAAUGGUGAGGAUGAAGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006575371.2
ncRNA:21   UGAGAAGUAGGAGUGGUAAGU   1
  |*|||||||=|||||||||||
targets:1015   AAUCUUCAUUCUCACCAUUCA   1035

1.5 PREDICTED: Glycine max protein LURP-one-related 7-like (LOC100806967), mRNA protein LURP-one-related 7-like(LOC100806967) coding protein psRNATarget
XM_006595767.2
ncRNA:21   UGAGAAGUAGGAGUGGUAAGU   1
  *=||*|||||||||||||||*
targets:356   CUUCAUCAUCCUCACCAUUCU   376

2.0 PREDICTED: Glycine max glucan endo-1,3-beta-glucosidase 12-like (LOC100797861), mRNA glucan endo-1,3-beta-glucosidase 12-like(LOC100797861) coding protein psRNATarget
XM_003540279.3
ncRNA:21   UGAGAAGUAGGAGUGGUAAGU   1
  ==||*|||*||||||||||||
targets:1059   GUUCAUCACCCUCACCAUUCA   1079

2.5 PREDICTED: Glycine max xyloglucan endotransglucosylase/hydrolase protein 9 (LOC100527891), mRNA xyloglucan endotransglucosylase/hydrolase protein 9(LOC100527891) coding protein psRNATarget