Search result

BaseInfo

ncRNA ID novel_gma_miR5807
Species Glycine max
Class miRNA
Genome position Chr11:1642733-1642857 [+]
Reference genome Glycine_max_v2.0
Source SRR835766
Length 24
Mature sequence(if miRNA) 102 - AAGUUUGUUUGAUUGUUUGGUAAA - 125
Stem-loop(if miRNA) --    --                 CUAACCAAUG                            C
  UAUC  ACAGUCAAAUAAACUUU          AAAAAAAAUUAGAAGCUGGUUGAAAUGU U
  ||||  |||||||||||||||||          ||||||||||||||||||||||||||||
  AUGG  UGUUAGUUUGUUUGAAA          UUUUUUUUAAUUUUUGACUAACUUUACA U
AA    UU                 -AGUCGAUCA                            G
Stem-loop sequence UAUCACAGUCAAAUAAACUUUCUAACCAAUGAAAAAAAAUUAGAAGCUGGUUGAAAUGUCUUGACAUUUCAAUCAGUUUUUAAUUUUUUUUACUAGCUGAAAAGUUUGUUUGAUUGUUUGGUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003531880.3
ncRNA:24   AAAU-GGUUUGUUAGUUUGUUUGAA   1
  |*||-=||||||||||||||||||*
targets:113   UCUAGUCAAACAAUCAAACAAACUC   137

1.0 PREDICTED: Glycine max uncharacterized LOC100812808 (LOC100812808), mRNA uncharacterized LOC100812808(LOC100812808) coding protein psRNATarget
AK285298.1
ncRNA:22   AUGGUUUGUUAGUUUGUUUGAA   1
  *==||||||||||||||||||*
targets:1   GGUCAAACAAUCAAACAAACUC   22

1.0 Glycine max cDNA, clone: GMFL01-06-P20 NA coding protein psRNATarget
XM_006591565.1
ncRNA:24   AAAUGGUUUGUUAGUUUGUUUGAA   1
  *|||=*|||||||||||||||=||
targets:530   AUUAUAAAACAAUCAAACAAAUUU   553

2.5 PREDICTED: Glycine max protein FAR1-RELATED SEQUENCE 5-like (LOC100795665), mRNA protein FAR1-RELATED SEQUENCE 5-like(LOC100795665) coding protein psRNATarget