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BaseInfo

ncRNA ID	novel_gma_miR5774
Species	Glycine max
Class	miRNA
Genome position	Chr7:26491719-26491783 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1295517
Length	23
Mature sequence(if miRNA)	43 - GGAAGAGAGAGAAGAUUUGGGCU - 65
Stem-loop(if miRNA)	--------G              UUUGGGC     A          GAAGAGAGAGAAGA       UUUUU U          ||||||||||||||       |||||          CUUUUUUCUUUUCU       AAAAA A UUUCUUUUA              -UUUAAU     A
Stem-loop sequence	GGAAGAGAGAGAAGAUUUGGGCUUUUUAUAAAAAAAUAAUUUUCUUUUCUUUUUUCAUUUUCUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001289284.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   *|=|||||*|||||||||||||| targets:21   CGUCCAAAGCUUCUCUCUCUUCC   43 Target Full Sequence	1.0	Glycine max pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like (LOC100800884), mRNA	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like(LOC100800884)	coding protein	psRNATarget
BT094601.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   *|=|||||*|||||||||||||| targets:22   CGUCCAAAGCUUCUCUCUCUUCC   44 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-24N24 unknown mRNA	NA	coding protein	psRNATarget
XM_006597691.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   *|=|||||*|||||||||||||| targets:96   CGUCCAAAGCUUCUCUCUCUUCC   118 Target Full Sequence	1.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like (LOC100800884), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like(LOC100800884)	coding protein	psRNATarget
NM_001255111.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   *|*|||||*|||||||||||||| targets:24   CGGCCAAAGCUUCUCUCUCUUCC   46 Target Full Sequence	1.0	Glycine max haloacid dehalogenase-like hydrolase domain-containing protein 3-like (LOC100815659), mRNA	haloacid dehalogenase-like hydrolase domain-containing protein 3-like(LOC100815659)	coding protein	psRNATarget
BT095445.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   *|*|||||*|||||||||||||| targets:26   CGGCCAAAGCUUCUCUCUCUUCC   48 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-19K6 unknown mRNA	NA	coding protein	psRNATarget
BT097538.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **==|||*||||||||||||||| targets:14   UCUUCAAUUCUUCUCUCUCUUCC   36 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-22M9 unknown mRNA	NA	coding protein	psRNATarget
XM_006584979.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **|=|*||||||||||||||||* targets:60   UCCUCUAAUCUUCUCUCUCUUCA   82 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X1, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_014778772.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **|=|*||||||||||||||||* targets:60   UCCUCUAAUCUUCUCUCUCUUCA   82 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X2, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_006584980.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **|=|*||||||||||||||||* targets:60   UCCUCUAAUCUUCUCUCUCUUCA   82 Target Full Sequence	2.0	PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL1-like (LOC100819012), transcript variant X3, mRNA	E3 ubiquitin-protein ligase UPL1-like(LOC100819012)	coding protein	psRNATarget
XM_003548648.3	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   |*=||||||=||||||||||*|| targets:154   AAUCCAAAUUUUCUCUCUCUGCC   176 Target Full Sequence	2.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like (LOC100796114), mRNA	pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like(LOC100796114)	coding protein	psRNATarget
XM_006576071.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **||||*|||*|||||||||||| targets:34   UCCCCAUAUCCUCUCUCUCUUCC   56 Target Full Sequence	2.5	PREDICTED: Glycine max phantastica transcription factor b (PHANb), transcript variant X1, mRNA	phantastica transcription factor b(PHANb)	coding protein	psRNATarget
XM_006601893.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **||||||*|*|||||||||||| targets:273   UUCCCAAACCCUCUCUCUCUUCC   295 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized acetyltransferase At3g50280-like (LOC100792476), mRNA	uncharacterized acetyltransferase At3g50280-like(LOC100792476)	coding protein	psRNATarget
XM_006591317.2	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **||||||*|*|||||||||||| targets:441   UUCCCAAACCCUCUCUCUCUUCC   463 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized acetyltransferase At3g50280-like (LOC100799704), mRNA	uncharacterized acetyltransferase At3g50280-like(LOC100799704)	coding protein	psRNATarget
XM_014764559.1	ncRNA:23   UCGGGUU-UAGAAGAGAGAGAAGG   1   **|||=|-|||||||||||||||| targets:391   UUCCCGAGAUCUUCUCUCUCUUCC   414 Target Full Sequence	3.0	PREDICTED: Glycine max arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like (LOC100787759), transcript variant X2, mRNA	arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like(LOC100787759)	coding protein	psRNATarget
XM_003549650.3	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   |*|||*|||=||||||||||||* targets:42   AUCCCUAAUUUUCUCUCUCUUCA   64 Target Full Sequence	3.0	PREDICTED: Glycine max WD repeat-containing protein 76-like (LOC100778960), mRNA	WD repeat-containing protein 76-like(LOC100778960)	coding protein	psRNATarget
XM_014763067.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **|=||||*=||||||||||||= targets:34   CCCUCAAAAUUUCUCUCUCUUCU   56 Target Full Sequence	3.0	PREDICTED: Glycine max actin-related protein 7-like (LOC100803056), transcript variant X2, mRNA	actin-related protein 7-like(LOC100803056)	coding protein	psRNATarget
XM_014763068.1	ncRNA:23   UCGGGUUUAGAAGAGAGAGAAGG   1   **|=||||*=||||||||||||= targets:34   CCCUCAAAAUUUCUCUCUCUUCU   56 Target Full Sequence	3.0	PREDICTED: Glycine max actin-related protein 7-like (LOC100803056), transcript variant X3, mRNA	actin-related protein 7-like(LOC100803056)	coding protein	psRNATarget